Effective results for Listeria ivanovii subsp. ivanovii PAM 55 (eggnog40)

Summary

Number of putative secreted proteins: 54
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 13 eukaryotic-like domains, contained in 54 proteins (22 high, 32 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
881621.LIV_1181				PF02095 PF12799	ER
881621.LIV_0805				(PF13402) (PF03272)	ER
881621.LIV_1077				(PF10662)	(mitochondrial)
881621.LIV_0330				(PF16403)	ER
881621.LIV_2052				PF12799	ER
881621.LIV_0353				PF12799	ER
881621.LIV_0352				PF12799	ER
881621.LIV_0354				PF12799	ER
881621.LIV_2501				PF12799	ER
881621.LIV_1185				PF12799	ER
881621.LIV_1187				PF12799	ER
881621.LIV_1182				PF12799	ER
881621.LIV_1188				PF12799	ER
881621.LIV_1621				(PF00413)	ER
881621.LIV_1994				(PF06824)	(mitochondrial)
881621.LIV_1178				PF12799	ER
881621.LIV_2099				(PF09683)	ER
881621.LIV_1143				(PF10662)	(mitochondrial); mitochondrial
881621.LIV_1574				(PF00359)	(ER)
881621.LIV_2372				PF12799	ER
881621.LIV_2578				PF12799	ER
881621.LIV_2753				(PF16403)	ER
881621.LIV_2631				(PF16403)	ER
881621.LIV_1217				(PF00413)	ER
881621.LIV_0073				PF12799	ER
881621.LIV_0070				(PF00413)	ER
881621.LIV_1690				PF12799	ER
881621.LIV_1619				(PF00413)	ER
881621.LIV_1183				PF12799	(plastid)
881621.LIV_0806				(PF13402) (PF03272)
881621.LIV_2579				PF00834	(ER)
881621.LIV_0408				(PF00359)
881621.LIV_0406				(PF00359)
881621.LIV_0404				PF00834
881621.LIV_2257				(PF00359)
881621.LIV_0410				PF00834
881621.LIV_1794				PF00834
881621.LIV_2695				(PF07653)
881621.LIV_2085				(PF00359)
881621.LIV_2086				(PF00359)
881621.LIV_0577				(PF00359)
881621.LIV_0576				(PF00359)
881621.LIV_0801				(PF08950)
881621.LIV_0815				(PF00359)
881621.LIV_0440				(PF06824)
881621.LIV_2562				(PF00359)
881621.LIV_2563				(PF00359)
881621.LIV_2588				(PF00359)
881621.LIV_2587				(PF00359)
881621.LIV_2581				PF00834
881621.LIV_0674				PF00834
881621.LIV_0291				(PF00359)
881621.LIV_0860				(PF00359)
881621.LIV_2129				(PF00359)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================