Effective results for Veillonella sp. oral taxon 158 str. F0412 (eggnog40)

Summary

Number of putative secreted proteins: 21
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 8 eukaryotic-like domains, contained in 21 proteins (2 high, 19 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
879309.HMPREF9199_0318				(PF00939)	ER
879309.HMPREF9199_0712				(PF00939)	ER
879309.HMPREF9199_1508				(PF00939)	ER
879309.HMPREF9199_0759				(PF09511)	mitochondrial
879309.HMPREF9199_1476				(PF00939)	ER
879309.HMPREF9199_0621				(PF01693)	(mitochondrial)
879309.HMPREF9199_1281				(PF03083)	ER; (ER)
879309.HMPREF9199_0218				(PF00939)	ER
879309.HMPREF9199_1420				PF10551	(mitochondrial)
879309.HMPREF9199_1835				(PF13936)
879309.HMPREF9199_1209				(PF00939)
879309.HMPREF9199_1784				(PF13936)
879309.HMPREF9199_1340				(PF03083)
879309.HMPREF9199_0756				PF11443
879309.HMPREF9199_0734				(PF13936)
879309.HMPREF9199_0936				(PF13936)
879309.HMPREF9199_1282				(PF00939)
879309.HMPREF9199_0695				(PF13936)
879309.HMPREF9199_2034				(PF08123)
879309.HMPREF9199_0987				(PF13936)
879309.HMPREF9199_0683				(PF01693)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================