Effective results for gamma proteobacterium IMCC3088 (eggnog40)

Summary

Number of putative secreted proteins: 26
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 11 eukaryotic-like domains, contained in 26 proteins (2 high, 24 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
876044.IMCC3088_260				(PF13469)	ER
876044.IMCC3088_466				(PF14336)	(ER)
876044.IMCC3088_1066				(PF05019)	(mitochondrial)
876044.IMCC3088_1824				(PF14863)	ER
876044.IMCC3088_2738				(PF02544)	ER
876044.IMCC3088_1963				(PF01509)	(mitochondrial)
876044.IMCC3088_890				(PF14863)	ER; (ER)
876044.IMCC3088_1913				(PF13469)	(mitochondrial)
876044.IMCC3088_2104				(PF13469)	(plastid)
876044.IMCC3088_2105				(PF06258)	(mitochondrial)
876044.IMCC3088_1512				PF00410	(ER)
876044.IMCC3088_462				(PF11815)
876044.IMCC3088_1859				(PF16565)
876044.IMCC3088_2102				(PF06258)
876044.IMCC3088_87				(PF13469)
876044.IMCC3088_944				PF00410	not used
876044.IMCC3088_790				(PF02958)
876044.IMCC3088_1496				(PF02958)
876044.IMCC3088_1495				(PF13469)
876044.IMCC3088_1019				(PF13469)
876044.IMCC3088_132				(PF13469)
876044.IMCC3088_61				(PF14863)
876044.IMCC3088_1962				(PF01509)
876044.IMCC3088_1467				(PF13469)
876044.IMCC3088_2215				(PF13469)
876044.IMCC3088_242				(PF05019)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================