Effective results for Streptococcus porcinus str. Jelinkova 176 (eggnog40)

Summary

Number of putative secreted proteins: 92
- Predicted by T4SEpre: 96
- Predicted by EffectiveELD: 9 eukaryotic-like domains, contained in 17 proteins (1 high, 16 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
873448.STRPO_1429				(PF05257)	ER
873448.STRPO_0917			+		ER
873448.STRPO_0924			+		ER
873448.STRPO_1436				(PF05257)	ER
873448.STRPO_1401			+		ER
873448.STRPO_1391			+		mitochondrial; (mitochondrial)
873448.STRPO_0956			+		mitochondrial
873448.STRPO_0381			+		ER
873448.STRPO_1614			+		ER
873448.STRPO_0625			+		ER
873448.STRPO_1289			+		ER
873448.STRPO_0368				(PF06280)	ER
873448.STRPO_1290			+		(ER)
873448.STRPO_1036			+		ER
873448.STRPO_0176				(PF05257)	ER
873448.STRPO_0238			+		ER
873448.STRPO_0325			+		ER
873448.STRPO_0259			+		mitochondrial; (mitochondrial)
873448.STRPO_1470				(PF00344)	mitochondrial
873448.STRPO_0805			+		(mitochondrial)
873448.STRPO_1065			+		ER
873448.STRPO_0706				(PF02971) (PF07837)
873448.STRPO_1166			+		ER
873448.STRPO_0717			+		(mitochondrial)
873448.STRPO_0971			+		(mitochondrial)
873448.STRPO_1110			+		(mitochondrial)
873448.STRPO_0207				PF02916	(ER)
873448.STRPO_0911			+
873448.STRPO_1730			+
873448.STRPO_1747			+
873448.STRPO_0291			+
873448.STRPO_0296				(PF05257)
873448.STRPO_1508			+
873448.STRPO_1389			+
873448.STRPO_0665			+
873448.STRPO_0444			+
873448.STRPO_1884			+
873448.STRPO_1155			+
873448.STRPO_1088			+
873448.STRPO_0616				(PF03714)
873448.STRPO_1150			+
873448.STRPO_1236			+
873448.STRPO_0555			+
873448.STRPO_0559				(PF01487)
873448.STRPO_0385			+
873448.STRPO_1169			+
873448.STRPO_0966			+
873448.STRPO_0622			+
873448.STRPO_0714			+
873448.STRPO_0154			+
873448.STRPO_1975			+
873448.STRPO_0579			+
873448.STRPO_1282			+
873448.STRPO_0972			+
873448.STRPO_1599			+
873448.STRPO_0767			+
873448.STRPO_0217			+
873448.STRPO_2032				(PF05257)
873448.STRPO_0991			+
873448.STRPO_1133			+
873448.STRPO_1451			+
873448.STRPO_1908			+
873448.STRPO_0699			+
873448.STRPO_0831				(PF06280)
873448.STRPO_1382			+
873448.STRPO_1801				(PF00344)
873448.STRPO_1469			+
873448.STRPO_1921			+
873448.STRPO_0320			+
873448.STRPO_0784			+
873448.STRPO_0031			+
873448.STRPO_0033			+
873448.STRPO_1256				(PF05495)
873448.STRPO_1327			+
873448.STRPO_0258			+
873448.STRPO_1471			+
873448.STRPO_1474			+
873448.STRPO_0333			+
873448.STRPO_1266			+
873448.STRPO_1265			+
873448.STRPO_1312			+
873448.STRPO_0808			+
873448.STRPO_1688				(PF03714)
873448.STRPO_1048			+
873448.STRPO_0302			+
873448.STRPO_1308			+
873448.STRPO_0907			+
873448.STRPO_1699			+
873448.STRPO_1844				(PF01487)
873448.STRPO_0006			+
873448.STRPO_0462			+
873448.STRPO_0464				(PF06280)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
• T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: YES (FDR = 7.2 %)
  Estimated copy number = 0 (0/0 KEGG proteins)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================