Effective results for Streptococcus parauberis NCFD 2020 (eggnog40)

Summary

Number of putative secreted proteins: 96
- Predicted by T4SEpre: 92
- Predicted by EffectiveELD: 10 eukaryotic-like domains, contained in 28 proteins (2 high, 26 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
873447.SPB_0378			+		ER
873447.SPB_1138			+		mitochondrial
873447.SPB_2205			+		ER
873447.SPB_2053			+		mitochondrial; (mitochondrial)
873447.SPB_0228			+		mitochondrial
873447.SPB_2043			+		ER
873447.SPB_1322			+		(mitochondrial)
873447.SPB_1790			+		ER
873447.SPB_0333			+		ER
873447.SPB_1874			+		ER
873447.SPB_0465			+		ER
873447.SPB_1215			+		ER
873447.SPB_0928			+		ER
873447.SPB_1703				(PF05257)	ER
873447.SPB_1157			+		(mitochondrial)
873447.SPB_2015				(PF05257)	ER
873447.SPB_0575			+		(mitochondrial)
873447.SPB_1572			+		ER
873447.SPB_2003				(PF05257)	ER
873447.SPB_1565			+		ER
873447.SPB_0472			+		(mitochondrial)
873447.SPB_0130				(PF02971) (PF07837)
873447.SPB_1152			+		(ER)
873447.SPB_0762				PF02916	(ER)
873447.SPB_1294			+		(mitochondrial)
873447.SPB_2105			+
873447.SPB_0377				(PF05257)
873447.SPB_0370				(PF02229)
873447.SPB_1918				(PF00232)
873447.SPB_1916				(PF00232)
873447.SPB_0209			+
873447.SPB_0204			+
873447.SPB_0997			+
873447.SPB_0999			+
873447.SPB_1835			+
873447.SPB_1013			+
873447.SPB_1653			+
873447.SPB_0546			+
873447.SPB_1936			+
873447.SPB_1939				PF00910
873447.SPB_0356			+
873447.SPB_1331				(PF05257)
873447.SPB_1984			+
873447.SPB_0533				(PF00232)
873447.SPB_0530			+
873447.SPB_1061			+
873447.SPB_1865			+
873447.SPB_1354			+
873447.SPB_1264			+
873447.SPB_2062			+
873447.SPB_0498			+
873447.SPB_0476				(PF00232)
873447.SPB_0473				(PF00232)
873447.SPB_1278				(PF00232)
873447.SPB_1272			+
873447.SPB_1309			+
873447.SPB_0480				(PF00232)
873447.SPB_0640			+
873447.SPB_0888			+
873447.SPB_1851			+
873447.SPB_0293				(PF01487)
873447.SPB_0292			+
873447.SPB_0298			+
873447.SPB_0061			+
873447.SPB_0065				(PF00232)
873447.SPB_1889			+
873447.SPB_2190			+
873447.SPB_0438				(PF00232)
873447.SPB_0058			+
873447.SPB_1412			+
873447.SPB_1146			+
873447.SPB_1097				(PF01487)
873447.SPB_1707			+
873447.SPB_2143			+
873447.SPB_1228			+
873447.SPB_0042				(PF06100)
873447.SPB_0043				(PF06100)
873447.SPB_0555				(PF00232)
873447.SPB_1394			+
873447.SPB_0956			+
873447.SPB_1773			+
873447.SPB_2152			+
873447.SPB_1796				(PF09683)	not used
873447.SPB_0386			+
873447.SPB_1160			+
873447.SPB_2126			+
873447.SPB_0391			+
873447.SPB_0123				(PF02229)
873447.SPB_0081			+
873447.SPB_1373				(PF00232)
873447.SPB_1757			+
873447.SPB_1023			+
873447.SPB_0503				(PF00232)
873447.SPB_1966			+
873447.SPB_1961			+
873447.SPB_1360				(PF00232)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
• T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: YES (FDR = 7.2 %)
  Estimated copy number = 0 (0/0 KEGG proteins)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================