Metamenu

Effective results for Streptococcus mitis ATCC 6249 (eggnog40)

Summary

Number of putative secreted proteins: 80
- Predicted by T4SEpre: 75
- Predicted by EffectiveELD: 9 eukaryotic-like domains, contained in 20 proteins (2 high, 18 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
864567.HMPREF8571_0800+ER
864567.HMPREF8571_0207+mitochondrial; (mitochondrial)
864567.HMPREF8571_0813+ER
864567.HMPREF8571_0145+mitochondrial; (mitochondrial)
864567.HMPREF8571_0564+mitochondrial
864567.HMPREF8571_0351(PF00344)mitochondrial
864567.HMPREF8571_0689(PF09683)ER
864567.HMPREF8571_1487+(mitochondrial); (plastid)
864567.HMPREF8571_1485+ER
864567.HMPREF8571_0223+ER
864567.HMPREF8571_1016+(mitochondrial)
864567.HMPREF8571_1011+ER
864567.HMPREF8571_1012+ER
864567.HMPREF8571_1013+ER
864567.HMPREF8571_0986+ER
864567.HMPREF8571_0758(PF06280)ER
864567.HMPREF8571_0755+ER
864567.HMPREF8571_0534(PF00344)ER; (ER)
864567.HMPREF8571_0134+ER
864567.HMPREF8571_0283+(mitochondrial)
864567.HMPREF8571_1276(PF04991)mitochondrial
864567.HMPREF8571_1279(PF04991)(ER)
864567.HMPREF8571_0678(PF06280)ER
864567.HMPREF8571_0902+ER
864567.HMPREF8571_1647(PF03644)(mitochondrial)
864567.HMPREF8571_0605+ER
864567.HMPREF8571_0119+(mitochondrial)
864567.HMPREF8571_1320+ER
864567.HMPREF8571_0461+ER
864567.HMPREF8571_0928+ER
864567.HMPREF8571_0822+(ER)
864567.HMPREF8571_0950+ER
864567.HMPREF8571_1705+(mitochondrial)
864567.HMPREF8571_0984+(plastid)
864567.HMPREF8571_0443PF02916(mitochondrial)
864567.HMPREF8571_1277(PF04991)(ER)
864567.HMPREF8571_0379+
864567.HMPREF8571_0172+
864567.HMPREF8571_1763+
864567.HMPREF8571_0147+
864567.HMPREF8571_1371+
864567.HMPREF8571_0355+
864567.HMPREF8571_0350+
864567.HMPREF8571_1747+
864567.HMPREF8571_0694+
864567.HMPREF8571_0165+
864567.HMPREF8571_0504+
864567.HMPREF8571_0799+
864567.HMPREF8571_0530(PF01501)
864567.HMPREF8571_0532(PF01501)
864567.HMPREF8571_0401PF04103
864567.HMPREF8571_1103+
864567.HMPREF8571_0523(PF01501)
864567.HMPREF8571_0522+
864567.HMPREF8571_0521(PF01501)
864567.HMPREF8571_0527(PF01501)
864567.HMPREF8571_0526(PF01501)
864567.HMPREF8571_1111+
864567.HMPREF8571_0886+
864567.HMPREF8571_0066+
864567.HMPREF8571_1256+
864567.HMPREF8571_1407+
864567.HMPREF8571_1718+
864567.HMPREF8571_0713(PF03083)
864567.HMPREF8571_0788+
864567.HMPREF8571_0675+
864567.HMPREF8571_0451(PF04991)
864567.HMPREF8571_1084+
864567.HMPREF8571_1262+
864567.HMPREF8571_1517+
864567.HMPREF8571_0732+
864567.HMPREF8571_1586+
864567.HMPREF8571_1213+
864567.HMPREF8571_1680+
864567.HMPREF8571_0316+
864567.HMPREF8571_1456+
864567.HMPREF8571_0492+
864567.HMPREF8571_0303(PF03083)
864567.HMPREF8571_0540+
864567.HMPREF8571_1450+

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0 (0/0 KEGG proteins)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================