Metamenu

Effective results for Parascardovia denticolens DSM 10105 = JCM 12538 (eggnog40)

Summary

Number of putative secreted proteins: 12
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 7 eukaryotic-like domains, contained in 12 proteins (0 high, 12 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
864564.HMPREF0620_0556(PF05257)(ER); ER
864564.HMPREF0620_0293(PF03423)ER
864564.HMPREF0620_1191(PF03718)(ER)
864564.HMPREF0620_0056(PF01501)(ER)
864564.HMPREF0620_0774(PF11969)
864564.HMPREF0620_0208(PF01501)
864564.HMPREF0620_0207(PF01501)
864564.HMPREF0620_0363(PF08354)
864564.HMPREF0620_0728(PF14249)
864564.HMPREF0620_1548(PF05257)
864564.HMPREF0620_0461(PF05257)
864564.HMPREF0620_0316(PF05257)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================