Effective results for Agrobacterium sp. H13-3 (eggnog40)

Summary

Number of putative secreted proteins: 90
- Predicted by T4SEpre: 81
- Predicted by EffectiveELD: 10 eukaryotic-like domains, contained in 18 proteins (0 high, 18 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV), Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
861208.AGROH133_07458+ER
861208.AGROH133_06853+(mitochondrial); mitochondrial
861208.AGROH133_07921(PF00127)ER
861208.AGROH133_13147+mitochondrial
861208.AGROH133_13780+ER
861208.AGROH133_05769+ER; (mitochondrial)
861208.AGROH133_03108+ER
861208.AGROH133_10003+(mitochondrial); (plastid)
861208.AGROH133_03258+ER
861208.AGROH133_07219+(mitochondrial)
861208.AGROH133_11490+ER
861208.AGROH133_04180+mitochondrial
861208.AGROH133_13026+ER
861208.AGROH133_05994(PF00127)ER; (ER)
861208.AGROH133_05526(PF00127)ER
861208.AGROH133_12283+ER
861208.AGROH133_07317+ER
861208.AGROH133_04238+ER
861208.AGROH133_12657(PF00127)ER
861208.AGROH133_05889+ER; (ER)
861208.AGROH133_05653(PF06455)ER
861208.AGROH133_08171+ER
861208.AGROH133_07643+(mitochondrial)
861208.AGROH133_09159+(ER)
861208.AGROH133_09613(PF00091) (PF12327)
861208.AGROH133_06099+(mitochondrial)
861208.AGROH133_08903+plastid
861208.AGROH133_06792+(ER)
861208.AGROH133_07407(PF00091) (PF12327)
861208.AGROH133_13075(PF00091) (PF12327)
861208.AGROH133_03418+(mitochondrial)
861208.AGROH133_12052+(mitochondrial)
861208.AGROH133_06516+(plastid)
861208.AGROH133_06730+
861208.AGROH133_03976+
861208.AGROH133_03574+
861208.AGROH133_02996+
861208.AGROH133_12757+
861208.AGROH133_13979(PF16387)
861208.AGROH133_10454+
861208.AGROH133_08313+
861208.AGROH133_09958(PF05168)
861208.AGROH133_12169+
861208.AGROH133_11551+
861208.AGROH133_11958+
861208.AGROH133_03757+
861208.AGROH133_06419+
861208.AGROH133_08879(PF09731)
861208.AGROH133_09338(PF05168)
861208.AGROH133_11545+
861208.AGROH133_04421+
861208.AGROH133_05154+
861208.AGROH133_04608+
861208.AGROH133_14029(PF05168)
861208.AGROH133_05495+
861208.AGROH133_04612+
861208.AGROH133_10142(PF16332)
861208.AGROH133_07124+
861208.AGROH133_06972+
861208.AGROH133_05825+
861208.AGROH133_12457+
861208.AGROH133_08153+
861208.AGROH133_08821+
861208.AGROH133_05223+
861208.AGROH133_07760+
861208.AGROH133_11220+
861208.AGROH133_09818+
861208.AGROH133_04675+
861208.AGROH133_14113+
861208.AGROH133_14067+
861208.AGROH133_11186+
861208.AGROH133_11436(PF00127)
861208.AGROH133_05029+
861208.AGROH133_05596+
861208.AGROH133_06649+
861208.AGROH133_10885+
861208.AGROH133_09258+
861208.AGROH133_08502+
861208.AGROH133_10101+
861208.AGROH133_03186+
861208.AGROH133_04136+
861208.AGROH133_09345(PF05168)
861208.AGROH133_12934+
861208.AGROH133_07312+
861208.AGROH133_05796(PF01442)
861208.AGROH133_05872+
861208.AGROH133_08521+
861208.AGROH133_07651+
861208.AGROH133_07163+
861208.AGROH133_02966(PF08975)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0.1 (1/10 KEGG proteins)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 1.125 (9/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================