Effective results for Micavibrio aeruginosavorus ARL-13 (eggnog40)

Summary

Number of putative secreted proteins: 77
- Predicted by T4SEpre: 61
- Predicted by EffectiveELD: 14 eukaryotic-like domains, contained in 26 proteins (15 high, 11 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
856793.MICA_2333			+		ER
856793.MICA_147				PF14312	(ER); ER
856793.MICA_148				PF14312	ER
856793.MICA_1568				PF00233	mitochondrial
856793.MICA_1418			+		ER
856793.MICA_1146			+		ER
856793.MICA_24			+		(mitochondrial)
856793.MICA_346			+		mitochondrial; (mitochondrial)
856793.MICA_2362				(PF13884)	ER
856793.MICA_2368				(PF13884)	ER
856793.MICA_2369				(PF13884)	ER
856793.MICA_2013			+		ER
856793.MICA_2168			+		ER
856793.MICA_118				(PF13884)	ER
856793.MICA_129				PF14312	(ER)
856793.MICA_130				PF14312	ER
856793.MICA_623			+		(mitochondrial)
856793.MICA_1670			+		ER
856793.MICA_2110			+		(mitochondrial)
856793.MICA_272			+		(mitochondrial); mitochondrial
856793.MICA_539			+		mitochondrial; (mitochondrial)
856793.MICA_70				PF14312	mitochondrial
856793.MICA_843			+		ER; (ER)
856793.MICA_2468			+		ER
856793.MICA_2465			+		ER
856793.MICA_1353				(PF06455)	ER
856793.MICA_2219			+		ER
856793.MICA_2459			+		ER
856793.MICA_534			+		ER
856793.MICA_684			+		(mitochondrial)
856793.MICA_1790				(PF03059)
856793.MICA_1086			+
856793.MICA_564			+
856793.MICA_814			+
856793.MICA_1964			+
856793.MICA_1890				PF10343
856793.MICA_150				PF14312
856793.MICA_2222			+
856793.MICA_749				PF06258
856793.MICA_748				PF06258
856793.MICA_587				PF02037
856793.MICA_581				(PF16715)
856793.MICA_750				PF06258
856793.MICA_2022			+
856793.MICA_295			+
856793.MICA_438				(PF09731)
856793.MICA_1444			+
856793.MICA_1066			+
856793.MICA_1598				PF06258
856793.MICA_925			+
856793.MICA_934			+
856793.MICA_389			+
856793.MICA_634			+
856793.MICA_1908			+
856793.MICA_2291			+
856793.MICA_358			+
856793.MICA_1018			+
856793.MICA_2427			+
856793.MICA_1645				(PF13884)
856793.MICA_1249			+
856793.MICA_1250			+
856793.MICA_885			+
856793.MICA_2243			+
856793.MICA_675			+
856793.MICA_1623			+
856793.MICA_1538				PF04733
856793.MICA_1755			+
856793.MICA_850				(PF09825)
856793.MICA_856			+
856793.MICA_1637			+
856793.MICA_1747			+
856793.MICA_1536			+
856793.MICA_2261			+
856793.MICA_2463				PF01231
856793.MICA_1359			+
856793.MICA_2183			+
856793.MICA_312				(PF12471)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
• T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: YES (FDR = 7.2 %)
  Estimated copy number = 0.0 (0/10 KEGG proteins)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================