Effective results for Halomonas elongata DSM 2581 (eggnog40)

Summary

Number of putative secreted proteins: 46
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 8 eukaryotic-like domains, contained in 46 proteins (0 high, 46 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
768066.HELO_1558				(PF03480)	(ER)
768066.HELO_3942				(PF03480)	(ER)
768066.HELO_1094				(PF03480)	ER
768066.HELO_4223				(PF03480)	ER
768066.HELO_3556				(PF03480)	ER
768066.HELO_3951				(PF03480)	ER
768066.HELO_1051				(PF03480)	(ER)
768066.HELO_1504				(PF03480)	ER
768066.HELO_2884				(PF03480)	ER
768066.HELO_3282				(PF03480)	ER; (ER)
768066.HELO_2418				(PF04488)	(ER)
768066.HELO_3938				(PF03480)	ER
768066.HELO_3933				(PF03480)	ER
768066.HELO_2262				(PF00209)	(ER)
768066.HELO_3708				(PF03480)	ER
768066.HELO_1035				(PF03480)	ER
768066.HELO_4268				(PF03480)	ER
768066.HELO_1169				(PF03480)	(mitochondrial)
768066.HELO_4313				(PF00209)	ER
768066.HELO_3996				(PF03480)	ER
768066.HELO_2936				(PF03480)	ER
768066.HELO_2801				(PF03480)	ER
768066.HELO_4274				(PF03480)	ER
768066.HELO_1776				(PF03480)	ER
768066.HELO_2035				(PF03480)	mitochondrial; (mitochondrial)
768066.HELO_1544				(PF03480)	ER; (ER)
768066.HELO_4425				(PF03480)	(mitochondrial)
768066.HELO_1148				(PF03480)	ER
768066.HELO_1477				(PF03480)	mitochondrial
768066.HELO_2757				(PF06155)	(mitochondrial)
768066.HELO_3410				(PF03480)	(mitochondrial)
768066.HELO_4429				(PF00209)	(ER)
768066.HELO_2976				(PF02178)
768066.HELO_2759				(PF06155)
768066.HELO_3967				(PF00923)
768066.HELO_3770				(PF06155)
768066.HELO_1185				(PF00923)
768066.HELO_3498				(PF00923)
768066.HELO_2402				(PF04488)
768066.HELO_2107				(PF04098)
768066.HELO_1118				(PF00209)
768066.HELO_1569				(PF06155)
768066.HELO_2124				(PF00923)
768066.HELO_1214				(PF00209)
768066.HELO_1109				(PF13875)
768066.HELO_2492				(PF00923)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: YES (FDR = 7.7 %)
  Estimated copy number = 0.875 (7/8 KEGG proteins)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================