Effective results for Parvimonas sp. oral taxon 110 str. F0139 (eggnog40)

Summary

Number of putative secreted proteins: 60
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 22 eukaryotic-like domains, contained in 60 proteins (2 high, 58 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
767100.HMPREF9126_1479				(PF06280)	ER
767100.HMPREF9126_1298				(PF00079)	ER
767100.HMPREF9126_1299				(PF00079)	ER
767100.HMPREF9126_1046				(PF02517)	ER
767100.HMPREF9126_0735				(PF16199)	(mitochondrial)
767100.HMPREF9126_1451				(PF02517)	ER
767100.HMPREF9126_1452				(PF02517)	ER
767100.HMPREF9126_0944				(PF02517)	ER
767100.HMPREF9126_0941				(PF02517)	ER
767100.HMPREF9126_0943				(PF02517)	ER
767100.HMPREF9126_0942				(PF02517)	ER
767100.HMPREF9126_0949				(PF04218)	(mitochondrial)
767100.HMPREF9126_1447				(PF02517)	ER; (ER)
767100.HMPREF9126_1445				(PF02517)	ER
767100.HMPREF9126_1443				(PF02517)	ER; (ER)
767100.HMPREF9126_1150				(PF05684)	ER
767100.HMPREF9126_1436				(PF02517)	ER
767100.HMPREF9126_1548				(PF05738)	(ER)
767100.HMPREF9126_1549				(PF05738)	ER
767100.HMPREF9126_1550				(PF05738)	ER
767100.HMPREF9126_1415				(PF02844) (PF02843)	(mitochondrial)
767100.HMPREF9126_1416				(PF05738)	ER
767100.HMPREF9126_1210				(PF05738)	ER
767100.HMPREF9126_0269				(PF02517)	ER
767100.HMPREF9126_1231				(PF01496)	mitochondrial
767100.HMPREF9126_1224				(PF01813)	mitochondrial
767100.HMPREF9126_0946				(PF02517)	(mitochondrial)
767100.HMPREF9126_0288				(PF16199)	(ER)
767100.HMPREF9126_0814				(PF01813)	(mitochondrial)
767100.HMPREF9126_0357				(PF02844) (PF02843)
767100.HMPREF9126_1617				PF02916
767100.HMPREF9126_1120				(PF02517)
767100.HMPREF9126_0238				(PF05684)
767100.HMPREF9126_0525				(PF02401)
767100.HMPREF9126_0524				(PF02401)
767100.HMPREF9126_0523				(PF02401)
767100.HMPREF9126_1045				(PF02517)
767100.HMPREF9126_0945				(PF02517)
767100.HMPREF9126_1449				(PF02517)
767100.HMPREF9126_0172				(PF04991)
767100.HMPREF9126_0772				(PF01633)
767100.HMPREF9126_0774				(PF04991)
767100.HMPREF9126_0775				(PF04991)
767100.HMPREF9126_0603				(PF06280)
767100.HMPREF9126_0820				(PF01496)
767100.HMPREF9126_0821				(PF01992)
767100.HMPREF9126_0623				(PF02410)
767100.HMPREF9126_0242				PF08433	not used
767100.HMPREF9126_0622				(PF02410)	not used
767100.HMPREF9126_1216				(PF16199)
767100.HMPREF9126_0818				(PF01990)
767100.HMPREF9126_0816				(PF16886)
767100.HMPREF9126_0795				(PF03266)
767100.HMPREF9126_0865				(PF04991)
767100.HMPREF9126_1527				(PF05738)
767100.HMPREF9126_1505				(PF01633)
767100.HMPREF9126_1227				(PF01990)
767100.HMPREF9126_1226				(PF16886)
767100.HMPREF9126_1229				(PF01991)
767100.HMPREF9126_1228				(PF01992)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================