Metamenu

Effective results for Rothia dentocariosa ATCC 17931 (eggnog40)

Summary

Number of putative secreted proteins: 15
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 7 eukaryotic-like domains, contained in 15 proteins (6 high, 9 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
762948.HMPREF0733_12197PF09234ER
762948.HMPREF0733_11256(PF09511)mitochondrial
762948.HMPREF0733_11154(PF13582)ER
762948.HMPREF0733_11446(PF00545)(plastid)
762948.HMPREF0733_10358(PF00545)
762948.HMPREF0733_11132PF09234
762948.HMPREF0733_11479(PF13355)
762948.HMPREF0733_12217PF09234
762948.HMPREF0733_12216PF09234
762948.HMPREF0733_12218PF09234
762948.HMPREF0733_11131PF09234
762948.HMPREF0733_10825(PF14885)
762948.HMPREF0733_11370(PF04417)
762948.HMPREF0733_10369(PF00545)not used
762948.HMPREF0733_11369(PF04417)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================