Metamenu

Effective results for Fluviicola taffensis DSM 16823 (eggnog40)

Summary

Number of putative secreted proteins: 82
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 32 eukaryotic-like domains, contained in 82 proteins (37 high, 45 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
755732.Fluta_0707PF00801 PF05572ER
755732.Fluta_0107(PF13600) (PF13598)ER
755732.Fluta_1217PF00801 PF05572ER
755732.Fluta_1216PF00801 PF05572ER
755732.Fluta_0624PF00801 PF05572ER
755732.Fluta_0012(PF13600) (PF13598)ER
755732.Fluta_1951PF00801 PF05572ER
755732.Fluta_1567PF00801 PF05572ER
755732.Fluta_2333(PF13600) (PF13598)ER
755732.Fluta_2692PF00801 PF00431ER; (ER)
755732.Fluta_3905(PF09113)ER
755732.Fluta_0605PF00801ER
755732.Fluta_3743PF00801ER
755732.Fluta_0614PF02014ER
755732.Fluta_0108(PF00139)ER
755732.Fluta_0103PF00801ER
755732.Fluta_3229(PF06739)ER
755732.Fluta_1069PF00801ER
755732.Fluta_3106PF00801ER
755732.Fluta_3104PF00801ER
755732.Fluta_1682PF00801ER
755732.Fluta_3212PF00801ER
755732.Fluta_2340PF00801ER
755732.Fluta_0311(PF09112) (PF09113)(mitochondrial)
755732.Fluta_2885PF00801ER
755732.Fluta_2406PF14771ER
755732.Fluta_2633(PF00059)ER
755732.Fluta_0302(PF00094)ER
755732.Fluta_1940PF03351ER
755732.Fluta_2090PF00801ER
755732.Fluta_1225PF00431ER
755732.Fluta_2423PF00801ER
755732.Fluta_1782(PF06739)ER
755732.Fluta_2318(PF01764)ER
755732.Fluta_4048(PF01764)ER
755732.Fluta_1487PF00801ER
755732.Fluta_0999(PF09962)(mitochondrial)
755732.Fluta_1378(PF03400)mitochondrial; (mitochondrial)
755732.Fluta_0697PF00801ER
755732.Fluta_2067PF00801mitochondrial
755732.Fluta_2066PF00801mitochondrial
755732.Fluta_1592PF00801ER
755732.Fluta_0249PF03901ER
755732.Fluta_0250PF03901ER
755732.Fluta_0261(PF02544)ER
755732.Fluta_2012PF00801ER
755732.Fluta_3281PF00801ER
755732.Fluta_0072PF00801ER
755732.Fluta_2021PF00801ER
755732.Fluta_1385(PF03400)mitochondrial; (mitochondrial)
755732.Fluta_3810(PF01764)ER
755732.Fluta_0866PF14771ER
755732.Fluta_0855(PF05970) (PF02689)
755732.Fluta_3599(PF07224)(mitochondrial)
755732.Fluta_4008(PF03959)
755732.Fluta_1513(PF13366)
755732.Fluta_1778PF00801
755732.Fluta_0591(PF10544)
755732.Fluta_3221(PF08491)
755732.Fluta_3365(PF02655)
755732.Fluta_3756(PF13376)
755732.Fluta_2573(PF15588)
755732.Fluta_3681(PF13376)
755732.Fluta_1872(PF07766)
755732.Fluta_3761(PF13366)
755732.Fluta_3766(PF13376)
755732.Fluta_2891(PF13906)
755732.Fluta_3785(PF10544)
755732.Fluta_3836(PF13366)
755732.Fluta_3793(PF05970)
755732.Fluta_3094(PF00050)
755732.Fluta_2232PF03901
755732.Fluta_0222(PF02655)
755732.Fluta_1013(PF02655)
755732.Fluta_1748(PF13366)
755732.Fluta_0431(PF03400)
755732.Fluta_2863(PF13376)
755732.Fluta_3192(PF06739)
755732.Fluta_0065(PF03400)
755732.Fluta_1286(PF09962)
755732.Fluta_0883(PF13376)
755732.Fluta_1416(PF13366)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================