Effective results for Ahrensia sp. R2A130 (eggnog40)

Summary

Number of putative secreted proteins: 38
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 19 eukaryotic-like domains, contained in 38 proteins (5 high, 33 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
744979.R2A130_2211				(PF14248)	ER
744979.R2A130_2210				(PF14248)	(ER)
744979.R2A130_0806				(PF16350)	(ER)
744979.R2A130_2547				(PF01847)	(ER)
744979.R2A130_0067				(PF06455)	ER
744979.R2A130_2641				(PF10517)	ER
744979.R2A130_0083				(PF16184) (PF04862) PF00354
744979.R2A130_0785				(PF16350)	(ER)
744979.R2A130_1587				(PF03209)	ER
744979.R2A130_2738				(PF16350)	ER
744979.R2A130_2988				(PF14252) (PF00028)
744979.R2A130_0569				(PF10517)	(ER)
744979.R2A130_2249				(PF16350)	(mitochondrial)
744979.R2A130_2076				(PF00028) PF00354	not used
744979.R2A130_3115				(PF14252)
744979.R2A130_0578				PF03188
744979.R2A130_1577				(PF03209)
744979.R2A130_0370				(PF01442)
744979.R2A130_2239				(PF16350)
744979.R2A130_2236				(PF16350)
744979.R2A130_1965				(PF03098)
744979.R2A130_3423				(PF01268)
744979.R2A130_3556				(PF03098)
744979.R2A130_2776				(PF16184)
744979.R2A130_3145				(PF00815)
744979.R2A130_1223				(PF00815)
744979.R2A130_2295				PF09787
744979.R2A130_3517				(PF01268)	not used
744979.R2A130_2002				(PF00815)
744979.R2A130_1593				(PF09585)
744979.R2A130_1591				(PF09585)
744979.R2A130_3230				(PF01268)	not used
744979.R2A130_2658				(PF14252)
744979.R2A130_3322				(PF00028)
744979.R2A130_1078				(PF00815)
744979.R2A130_0304				PF00627
744979.R2A130_3317				(PF01268)
744979.R2A130_3673				(PF01268)	not used

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================