Metamenu

Effective results for Isoptericola variabilis 225 (eggnog40)

Summary

Number of putative secreted proteins: 14
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 6 eukaryotic-like domains, contained in 14 proteins (1 high, 13 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
743718.Isova_2203(PF06283) (PF07081)(mitochondrial)
743718.Isova_1140(PF06283) (PF07081)ER
743718.Isova_2983(PF06283)ER
743718.Isova_1717(PF07632)mitochondrial
743718.Isova_1898(PF06283)ER
743718.Isova_0524(PF06283)(ER)
743718.Isova_2195(PF06283) (PF07081)
743718.Isova_2209(PF06283)
743718.Isova_1246(PF03161)
743718.Isova_2799(PF13603)
743718.Isova_1718(PF07632)
743718.Isova_1772(PF06283)
743718.Isova_0551PF08213not used
743718.Isova_2002(PF13603)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================