Effective results for Pseudoalteromonas haloplanktis ANT/505 (eggnog40)

Summary

Number of putative secreted proteins: 41
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 19 eukaryotic-like domains, contained in 41 proteins (0 high, 41 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
722419.PH505_at00170				(PF13202) (PF00036)	(ER)
722419.PH505_ak00720				(PF16187)	ER
722419.PH505_at00160				(PF13202)	ER
722419.PH505_ai00460				(PF03959)	ER; (ER)
722419.PH505_ac00610				(PF13202)	ER
722419.PH505_bv00190				(PF13202)	ER
722419.PH505_dg00010				(PF09317)	(mitochondrial)
722419.PH505_av00110				(PF14240)	ER
722419.PH505_aq00380				(PF00028)	ER
722419.PH505_bv00220				(PF13202)	ER
722419.PH505_ao00070				(PF07646)	ER
722419.PH505_ae00740				(PF00028)	ER
722419.PH505_av00720				(PF09317)	ER
722419.PH505_al00370				(PF13582)	(ER)
722419.PH505_ar00290				(PF13202)	ER
722419.PH505_bv00200				(PF13202)	ER
722419.PH505_cc00040				(PF02460)	(ER)
722419.PH505_af00370				(PF13202)	ER
722419.PH505_af00390				(PF13202)	ER; (ER)
722419.PH505_aq00850				(PF01564)	ER
722419.PH505_bf00250				(PF13429)	(ER)
722419.PH505_al00310				(PF01564)	ER
722419.PH505_aj00450				(PF13429)	ER
722419.PH505_at00150				(PF13202)	ER; (ER)
722419.PH505_bn00150				(PF14240)	ER
722419.PH505_bs00060				(PF06315)	(mitochondrial)
722419.PH505_bo00200				(PF13875)
722419.PH505_bc00210				(PF10354)
722419.PH505_bt00160				(PF12576)
722419.PH505_ag00930				(PF09317)
722419.PH505_ab01330				(PF09996)	not used
722419.PH505_bg00410				(PF01564)
722419.PH505_an00460				(PF01564)
722419.PH505_bg00310				(PF14240)
722419.PH505_be00410				(PF14311)
722419.PH505_bv00210				(PF13202)
722419.PH505_ei00010				(PF06315)
722419.PH505_ac00480				(PF10013)	not used
722419.PH505_cj00060				(PF16187)
722419.PH505_ab01340				(PF09996)
722419.PH505_bk00330				(PF01564)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================