Metamenu

Effective results for Enterobacter cloacae subsp. cloacae NCTC 9394 (eggnog40)

Summary

Number of putative secreted proteins: 97
- Predicted by T4SEpre: 79
- Predicted by EffectiveELD: 7 eukaryotic-like domains, contained in 30 proteins (0 high, 30 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV), Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
718254.ENC_47680(PF00577)ER
718254.ENC_33270(PF00345)(mitochondrial); (plastid)
718254.ENC_26350+mitochondrial; (mitochondrial)
718254.ENC_32850(PF00577)ER
718254.ENC_03270(PF00345)ER
718254.ENC_03280(PF00577)ER
718254.ENC_06040(PF00345)ER
718254.ENC_13840(PF00577)ER
718254.ENC_22150(PF00345)ER
718254.ENC_32860(PF00345)ER
718254.ENC_06050(PF00577)ER
718254.ENC_13850(PF00345)ER
718254.ENC_19350(PF00345)ER
718254.ENC_22140(PF00577)ER
718254.ENC_33320(PF00345)(ER)
718254.ENC_04130(PF00345)ER
718254.ENC_42760+ER
718254.ENC_36420+ER
718254.ENC_40550+ER
718254.ENC_10940+ER
718254.ENC_06650+ER
718254.ENC_00480(PF00345)ER
718254.ENC_03020(PF00577)ER
718254.ENC_34100+ER
718254.ENC_12710+ER
718254.ENC_23370+(mitochondrial)
718254.ENC_00490(PF00577)ER
718254.ENC_47390+(mitochondrial); (plastid)
718254.ENC_32380+ER
718254.ENC_18220(PF02010)ER
718254.ENC_46520(PF00345)(ER); ER
718254.ENC_00960+ER
718254.ENC_00750+ER
718254.ENC_37380(PF07678)ER
718254.ENC_22320+(ER)
718254.ENC_37720+(mitochondrial); (plastid)
718254.ENC_00180+(mitochondrial)
718254.ENC_17580+(mitochondrial)
718254.ENC_26640+ER
718254.ENC_17330+(PF13392)
718254.ENC_29180+(mitochondrial)
718254.ENC_18360+(ER)
718254.ENC_19360+(PF00577)
718254.ENC_25120+(mitochondrial)
718254.ENC_21320+(mitochondrial)
718254.ENC_26960+
718254.ENC_15310+
718254.ENC_30020+
718254.ENC_24200+
718254.ENC_37570(PF16485)
718254.ENC_04950+
718254.ENC_41470+
718254.ENC_03250+
718254.ENC_24270+
718254.ENC_34000+
718254.ENC_05970+
718254.ENC_16580+
718254.ENC_42900+
718254.ENC_07030+
718254.ENC_16800+
718254.ENC_36550+
718254.ENC_10290+
718254.ENC_28070+
718254.ENC_39850+
718254.ENC_27650(PF13392)
718254.ENC_08900+
718254.ENC_12630+
718254.ENC_06470+
718254.ENC_30220+
718254.ENC_34910+
718254.ENC_14580+
718254.ENC_27510+
718254.ENC_36470+
718254.ENC_41340+
718254.ENC_47380+
718254.ENC_26030+
718254.ENC_36270+
718254.ENC_15520+
718254.ENC_04120(PF00577)
718254.ENC_47800+
718254.ENC_01950+
718254.ENC_06200+
718254.ENC_27660(PF13392)
718254.ENC_45270+
718254.ENC_27440(PF13392)
718254.ENC_33730+
718254.ENC_12180+
718254.ENC_18850+
718254.ENC_41370+
718254.ENC_04190+
718254.ENC_42640+
718254.ENC_47360+
718254.ENC_47690(PF00345)
718254.ENC_32480+
718254.ENC_39660+
718254.ENC_39940+
718254.ENC_36720(PF14328)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0.2 (2/10 KEGG proteins)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 1.625 (13/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================