Metamenu

Effective results for Clostridium cf. saccharolyticum K10 (eggnog40)

Summary

Number of putative secreted proteins: 78
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 18 eukaryotic-like domains, contained in 78 proteins (8 high, 70 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
717608.CLS_03540(PF01554)ER
717608.CLS_29780(PF00239)mitochondrial
717608.CLS_16650(PF00209)(ER)
717608.CLS_17350(PF01554)ER; (ER)
717608.CLS_10080(PF01554)(ER)
717608.CLS_30740(PF00209)ER; (ER)
717608.CLS_35480(PF01554)ER
717608.CLS_24970PF01807mitochondrial
717608.CLS_18870(PF01554)(ER)
717608.CLS_18860(PF01554)(ER)
717608.CLS_31260(PF01554)(ER)
717608.CLS_31510(PF01554)(mitochondrial)
717608.CLS_06810(PF00239)(mitochondrial)
717608.CLS_19650(PF01554)(mitochondrial)
717608.CLS_36910(PF02971) (PF07837)
717608.CLS_17840(PF00302)
717608.CLS_30950PF01807
717608.CLS_01720(PF01554)
717608.CLS_23920(PF02475)
717608.CLS_37070(PF07892)
717608.CLS_04820PF01807
717608.CLS_14780(PF01554)
717608.CLS_03620(PF01554)
717608.CLS_28620(PF01554)
717608.CLS_38000(PF00209)
717608.CLS_32760(PF01795)
717608.CLS_13800(PF01554)
717608.CLS_30030(PF00239)
717608.CLS_29940(PF03432)
717608.CLS_17260(PF01554)
717608.CLS_21980(PF03432)
717608.CLS_30020(PF00239)
717608.CLS_12510(PF01554)
717608.CLS_06610(PF13151)
717608.CLS_23170(PF00239)
717608.CLS_04720(PF03432)
717608.CLS_08090PF01807
717608.CLS_03980(PF14336)
717608.CLS_11430(PF01554)
717608.CLS_30270(PF08367)
717608.CLS_18950(PF12437)
717608.CLS_34370(PF01554)
717608.CLS_38050(PF01795)
717608.CLS_06590(PF08719)
717608.CLS_23030(PF12646)
717608.CLS_00670(PF00239)
717608.CLS_18610(PF00239)
717608.CLS_18700(PF00239)
717608.CLS_21840(PF00239)
717608.CLS_37620(PF01554)
717608.CLS_24690(PF00239)
717608.CLS_22150(PF00239)
717608.CLS_01470(PF00239)
717608.CLS_20300(PF00209)
717608.CLS_10190(PF01991)
717608.CLS_09340(PF03432)
717608.CLS_22590(PF01554)
717608.CLS_31100(PF00209)
717608.CLS_13720(PF12437)
717608.CLS_19820(PF00302)
717608.CLS_01250(PF08719)
717608.CLS_32670PF01807
717608.CLS_24940(PF00239)
717608.CLS_29380(PF00239)
717608.CLS_18820(PF03432)
717608.CLS_31010(PF00239)
717608.CLS_32930(PF01554)
717608.CLS_19780(PF08367)
717608.CLS_29710(PF03432)
717608.CLS_09610(PF00239)
717608.CLS_14990(PF07892)
717608.CLS_08030(PF00239)
717608.CLS_28450PF01807
717608.CLS_18330(PF01554)
717608.CLS_07770PF01807
717608.CLS_06220PF01807
717608.CLS_01390(PF03432)
717608.CLS_15550(PF08719)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================