Effective results for Alteromonas sp. SN2 (eggnog40)

Summary

Number of putative secreted proteins: 45
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 18 eukaryotic-like domains, contained in 45 proteins (6 high, 39 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
715451.ambt_03215				PF14240	ER
715451.ambt_00300				(PF08443)	mitochondrial
715451.ambt_02000				(PF08787)	ER
715451.ambt_05745				PF14240	ER
715451.ambt_08580				PF14240	ER
715451.ambt_05510				(PF02112)	ER
715451.ambt_07875				(PF08840)	ER
715451.ambt_21525				(PF08662)	ER
715451.ambt_16650				(PF08787)	ER; (ER)
715451.ambt_02730				PF14240	ER
715451.ambt_05925				(PF13023)	(mitochondrial)
715451.ambt_09835				(PF08787)	ER
715451.ambt_10480				(PF13582)	(ER)
715451.ambt_14065				(PF02010)	ER; (ER)
715451.ambt_03055				PF14240	ER
715451.ambt_02635				(PF06119)	ER
715451.ambt_03260				(PF08443)	ER
715451.ambt_18475				PF14240	ER
715451.ambt_15325				(PF09295)	(ER)
715451.ambt_19335				(PF08443)
715451.ambt_17660				(PF06080)
715451.ambt_19555				(PF13640)
715451.ambt_07255				(PF07693)
715451.ambt_16115				(PF11017)
715451.ambt_17420				(PF13640)
715451.ambt_21340				(PF11017)
715451.ambt_15120				(PF13023)
715451.ambt_09260				(PF13023)
715451.ambt_12960				(PF13640)
715451.ambt_04840				(PF11815)
715451.ambt_06145				(PF08840)
715451.ambt_08755				(PF01026)
715451.ambt_20860				(PF07693)
715451.ambt_12940				(PF13640)
715451.ambt_13145				(PF06080)
715451.ambt_20875				(PF01026)
715451.ambt_08770				(PF07693)
715451.ambt_15895				(PF01026)
715451.ambt_06740				(PF13640)
715451.ambt_14915				(PF13640)
715451.ambt_04305				(PF01026)
715451.ambt_03265				(PF08443)
715451.ambt_11860				(PF08443)
715451.ambt_09950				(PF01026)
715451.ambt_08130				(PF10013)	not used

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================