Metamenu

Effective results for Solobacterium moorei F0204 (eggnog40)

Summary

Number of putative secreted proteins: 19
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 10 eukaryotic-like domains, contained in 19 proteins (1 high, 18 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
706433.HMPREF9430_01611(PF16403)ER
706433.HMPREF9430_00675(PF03083)ER
706433.HMPREF9430_02062PF03141ER
706433.HMPREF9430_00816(PF11070)ER
706433.HMPREF9430_00380(PF16403)ER
706433.HMPREF9430_00756(PF16403)(ER); (mitochondrial)
706433.HMPREF9430_00648(PF03083)(ER)
706433.HMPREF9430_00757(PF16403)(ER)
706433.HMPREF9430_00610(PF01880)
706433.HMPREF9430_01698(PF14622)
706433.HMPREF9430_00969(PF13023)
706433.HMPREF9430_01784(PF13023)
706433.HMPREF9430_00957(PF13023)
706433.HMPREF9430_00558(PF11074)
706433.HMPREF9430_00550(PF01880)
706433.HMPREF9430_00921(PF14622)
706433.HMPREF9430_01522(PF01991)
706433.HMPREF9430_00904(PF03437)
706433.HMPREF9430_00499(PF03437)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================