Metamenu

Effective results for Pantoea ananatis LMG 20103 (eggnog40)

Summary

Number of putative secreted proteins: 609
- Predicted by EffectiveT3: 200 (high confidence), 302 (low confidence)
- Predicted by EffectiveCCBD: 22 within, 21 before, 45 behind expected region 25..70aa
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 10 eukaryotic-like domains, contained in 36 proteins (2 high, 34 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type III)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
706191.PANA_1261+(>)(mitochondrial)
706191.PANA_1682(>)(PF12729)ER
706191.PANA_2176(PF12729)ER
706191.PANA_1868(>)ER; (ER)
706191.PANA_2181(PF12729)mitochondrial
706191.PANA_3903+(mitochondrial)
706191.PANA_0583+(mitochondrial)
706191.PANA_0230(>)ER
706191.PANA_2972+ER
706191.PANA_2757(>)ER
706191.PANA_3029+ER; (ER)
706191.PANA_3331+ER
706191.PANA_0299(>)ER
706191.PANA_1404+(mitochondrial)
706191.PANA_1407(PF00328)(ER)
706191.PANA_2691+(ER)
706191.PANA_1880(PF12729)ER
706191.PANA_1313(>)(mitochondrial)
706191.PANA_1011(>)ER
706191.PANA_0679(>)ER
706191.PANA_0073+(mitochondrial)
706191.PANA_3790(>)ER
706191.PANA_3647(>)(mitochondrial)
706191.PANA_3266PF08975(mitochondrial)
706191.PANA_4211+(mitochondrial); (plastid)
706191.PANA_1797(>)ER
706191.PANA_2785+(mitochondrial); (plastid)
706191.PANA_3124(>)ER
706191.PANA_1283+ER
706191.PANA_3491(PF13347)ER; mitochondrial
706191.PANA_0098(>)(mitochondrial)
706191.PANA_3060+ER
706191.PANA_0799(>)ER
706191.PANA_4098(PF12729)ER
706191.PANA_3846(PF12729)ER
706191.PANA_2673(<)ER
706191.PANA_2104(<)ER
706191.PANA_3079+(mitochondrial)
706191.PANA_0105+(mitochondrial)
706191.PANA_0346(>)mitochondrial; (mitochondrial)
706191.PANA_0409(>)ER
706191.PANA_3993(PF12729)(ER); (plastid)
706191.PANA_1759(PF09825)ER
706191.PANA_2875(+)(>)ER; plastid
706191.PANA_2587++(ER)
706191.PANA_2058(<)ER
706191.PANA_4050(>)mitochondrial; (mitochondrial)
706191.PANA_2134+ER
706191.PANA_3428(PF12729)ER
706191.PANA_3753+ER
706191.PANA_0287(>)mitochondrial
706191.PANA_0355(PF12729)ER
706191.PANA_1951+(mitochondrial)
706191.PANA_1766(+)(>)(mitochondrial)
706191.PANA_1492(PF12729)mitochondrial; (mitochondrial)
706191.PANA_4060(PF12729)ER
706191.PANA_1947(PF12729)ER
706191.PANA_1837+ER
706191.PANA_4057+ER
706191.PANA_1473+(mitochondrial); (plastid)
706191.PANA_2156(>)ER
706191.PANA_0959(PF00328)ER
706191.PANA_2948+ER; (ER)
706191.PANA_2382(>)ER
706191.PANA_2369+(ER)
706191.PANA_1630+(mitochondrial); (plastid)
706191.PANA_0728(<)mitochondrial
706191.PANA_0037+ER; (ER)
706191.PANA_2393(+)(mitochondrial)
706191.PANA_4106(+)(mitochondrial); plastid
706191.PANA_2188+plastid
706191.PANA_4026+(plastid)
706191.PANA_2755+plastid
706191.PANA_1558(+)(mitochondrial)
706191.PANA_3110(+)(mitochondrial); (plastid)
706191.PANA_0179(+)ER
706191.PANA_3021+plastid
706191.PANA_3932(+)mitochondrial; (plastid)
706191.PANA_0217(+)(mitochondrial)
706191.PANA_4224(+)(mitochondrial)
706191.PANA_0854(+)mitochondrial; (mitochondrial)
706191.PANA_0682+(plastid)
706191.PANA_3861+(plastid)
706191.PANA_4213(+)(mitochondrial)
706191.PANA_0322+(mitochondrial)
706191.PANA_2831(+)(mitochondrial); (plastid)
706191.PANA_2524+(plastid)
706191.PANA_3128+plastid
706191.PANA_0479(+)(mitochondrial)
706191.PANA_1923(PF10013)(mitochondrial); not used
706191.PANA_2812+(PF13347)
706191.PANA_0303+plastid
706191.PANA_1908(+)mitochondrial; (mitochondrial)
706191.PANA_2066+(plastid)
706191.PANA_2668+(mitochondrial)
706191.PANA_0407(+)ER
706191.PANA_2820(+)mitochondrial
706191.PANA_1591(PF12729)(mitochondrial)
706191.PANA_4188(+)(mitochondrial)
706191.PANA_1979(+)(ER); (plastid)
706191.PANA_1971(+)mitochondrial
706191.PANA_0637(+)(mitochondrial); plastid
706191.PANA_1586+(mitochondrial)
706191.PANA_4061+plastid
706191.PANA_1409+(<)
706191.PANA_2595+(PF13347)
706191.PANA_2916+(plastid)
706191.PANA_3553(+)(mitochondrial)
706191.PANA_0332(+)(mitochondrial); plastid
706191.PANA_1782(<)(ER)
706191.PANA_3651+(>)
706191.PANA_2281d+plastid
706191.PANA_2281c+plastid
706191.PANA_2281b+plastid
706191.PANA_2281a+plastid
706191.PANA_0005(+)ER
706191.PANA_0110+plastid
706191.PANA_0384(+)(mitochondrial)
706191.PANA_3159++
706191.PANA_1554(+)mitochondrial
706191.PANA_0174+plastid
706191.PANA_1551+(ER)
706191.PANA_0861(+)ER
706191.PANA_2091+(plastid)
706191.PANA_3418(+)(mitochondrial)
706191.PANA_2842(+)ER
706191.PANA_3965(+)mitochondrial; (mitochondrial)
706191.PANA_0923+(ER)
706191.PANA_4137+
706191.PANA_3316(>)
706191.PANA_2394+
706191.PANA_3173+
706191.PANA_0554+
706191.PANA_3052+
706191.PANA_3542+
706191.PANA_3917+
706191.PANA_3356+
706191.PANA_0485(PF12729)
706191.PANA_3604(+)(mitochondrial); not used
706191.PANA_3825+
706191.PANA_3826+
706191.PANA_0934(+)(ER)
706191.PANA_0026(<)
706191.PANA_1047+
706191.PANA_4109+
706191.PANA_2419+
706191.PANA_1862(>)
706191.PANA_1249+
706191.PANA_3187+
706191.PANA_3296+
706191.PANA_3765+
706191.PANA_1729(>)
706191.PANA_3342+
706191.PANA_0123+
706191.PANA_3581+
706191.PANA_3580+
706191.PANA_3585+
706191.PANA_0832(>)
706191.PANA_0238(+)(PF13347)
706191.PANA_0234+
706191.PANA_2943+
706191.PANA_0059+
706191.PANA_0052+
706191.PANA_2979(+)(mitochondrial)
706191.PANA_2409+
706191.PANA_2407+
706191.PANA_2400+
706191.PANA_4144+
706191.PANA_2710+
706191.PANA_2358+
706191.PANA_3233(+)(ER)
706191.PANA_3119(<)
706191.PANA_3020(+)+
706191.PANA_3337(>)
706191.PANA_0134+
706191.PANA_0590+
706191.PANA_0221+
706191.PANA_0828(+)(mitochondrial)
706191.PANA_1082PF08975
706191.PANA_1085(PF13347)
706191.PANA_2696+
706191.PANA_1311+
706191.PANA_3281(+)(mitochondrial)
706191.PANA_3288+
706191.PANA_0966(+)(>)
706191.PANA_1262+
706191.PANA_3747+
706191.PANA_3035+
706191.PANA_0456(<)
706191.PANA_3815+
706191.PANA_3256(PF10685)not used
706191.PANA_0851+
706191.PANA_0677(>)
706191.PANA_1070+
706191.PANA_1092+
706191.PANA_1090(>)
706191.PANA_1415+
706191.PANA_1414+
706191.PANA_2689(+)(plastid)
706191.PANA_1300(PF14328)
706191.PANA_3941+
706191.PANA_0701(>)
706191.PANA_2206+
706191.PANA_2020+
706191.PANA_3008(>)
706191.PANA_3007+
706191.PANA_3863(<)
706191.PANA_0847(<)
706191.PANA_1794+
706191.PANA_0065+
706191.PANA_1337(+)(plastid)
706191.PANA_1332+
706191.PANA_1937+
706191.PANA_2789+
706191.PANA_2019+
706191.PANA_3123(+)(mitochondrial)
706191.PANA_3012+
706191.PANA_3015(>)
706191.PANA_0607(>)
706191.PANA_3490(PF13347)
706191.PANA_0787+
706191.PANA_1654+
706191.PANA_3872+
706191.PANA_3871(PF10685)not used
706191.PANA_3577+
706191.PANA_4033(>)
706191.PANA_3272+
706191.PANA_0874+
706191.PANA_0099(<)
706191.PANA_3656(<)
706191.PANA_1466+
706191.PANA_0995+
706191.PANA_4201+
706191.PANA_3510(+)(mitochondrial)
706191.PANA_0313+
706191.PANA_1221(<)
706191.PANA_0882+
706191.PANA_0884+
706191.PANA_2304+
706191.PANA_1352+
706191.PANA_2257+
706191.PANA_1150(<)
706191.PANA_1289(+)(ER)
706191.PANA_0646+
706191.PANA_3470+
706191.PANA_4087(+)(plastid)
706191.PANA_4080+
706191.PANA_0633(+)(ER)
706191.PANA_0740(PF13347)
706191.PANA_1347+
706191.PANA_1901(>)
706191.PANA_2248+
706191.PANA_2064+
706191.PANA_3335+
706191.PANA_2118(+)(mitochondrial)
706191.PANA_1750+
706191.PANA_3440(+)(ER)
706191.PANA_1141+
706191.PANA_3920+
706191.PANA_3535+
706191.PANA_3539+
706191.PANA_0336+
706191.PANA_1751(>)
706191.PANA_1201+
706191.PANA_1754(+)(PF10685)
706191.PANA_1113+
706191.PANA_1340(<)
706191.PANA_1572+
706191.PANA_3220(+)(mitochondrial)
706191.PANA_1978+
706191.PANA_1977+
706191.PANA_2584+
706191.PANA_2581(+)(ER)
706191.PANA_2274+
706191.PANA_2294+
706191.PANA_2129+
706191.PANA_2053+
706191.PANA_3051+
706191.PANA_3234(PF13347)
706191.PANA_0294(<)
706191.PANA_3528+
706191.PANA_3524(>)
706191.PANA_0343+
706191.PANA_4198+
706191.PANA_1109+
706191.PANA_2867+
706191.PANA_2861+
706191.PANA_4065+
706191.PANA_1408(+)(plastid)
706191.PANA_1965+
706191.PANA_1961(+)+
706191.PANA_2596+
706191.PANA_2465+
706191.PANA_1818+
706191.PANA_2283+
706191.PANA_0853+
706191.PANA_0648+
706191.PANA_2044(+)(>)
706191.PANA_2161+
706191.PANA_1957+
706191.PANA_0429+
706191.PANA_0423+
706191.PANA_3429+
706191.PANA_1145+
706191.PANA_0870+
706191.PANA_3080+
706191.PANA_3950(+)+
706191.PANA_0283+
706191.PANA_0606+
706191.PANA_0603(PF05704)
706191.PANA_1775+
706191.PANA_1489+
706191.PANA_1536+
706191.PANA_1175+
706191.PANA_2851(PF16485)
706191.PANA_1556+
706191.PANA_1394+
706191.PANA_1954(PF13347)
706191.PANA_1753+
706191.PANA_1780+
706191.PANA_2929(>)
706191.PANA_1827+
706191.PANA_1821+
706191.PANA_2149(>)
706191.PANA_2140+
706191.PANA_1878+
706191.PANA_0246+
706191.PANA_3435+
706191.PANA_3433+
706191.PANA_0561+
706191.PANA_1111+
706191.PANA_3544+
706191.PANA_0383+
706191.PANA_0385(<)
706191.PANA_0387(<)
706191.PANA_4042+
706191.PANA_0944+
706191.PANA_2847(<)
706191.PANA_0015+
706191.PANA_4062(PF12729)
706191.PANA_2444(+)(plastid)
706191.PANA_1839(<)
706191.PANA_1462+
706191.PANA_1460+
706191.PANA_1474+
706191.PANA_2714+
706191.PANA_3966+
706191.PANA_4095+
706191.PANA_0576(+)plastid
706191.PANA_3882(+)(mitochondrial)
706191.PANA_1211+
706191.PANA_1156+
706191.PANA_1028+
706191.PANA_2279+
706191.PANA_3843+
706191.PANA_2905+
706191.PANA_1849+
706191.PANA_2895(>)
706191.PANA_2540+
706191.PANA_0748+
706191.PANA_2360+
706191.PANA_2365+
706191.PANA_4059(>)
706191.PANA_0284(+)(ER)
706191.PANA_2160(+)(mitochondrial)
706191.PANA_2994+
706191.PANA_1521(+)(plastid)
706191.PANA_3091+
706191.PANA_2956(+)
706191.PANA_1858(+)
706191.PANA_2550(+)
706191.PANA_2398(+)
706191.PANA_2370(+)
706191.PANA_2375(+)
706191.PANA_2778(+)
706191.PANA_2770(+)
706191.PANA_3176(+)
706191.PANA_1738(+)
706191.PANA_3352(+)
706191.PANA_3597(+)
706191.PANA_0804(+)
706191.PANA_0737(+)
706191.PANA_1607(+)
706191.PANA_0025(+)
706191.PANA_4038(+)
706191.PANA_2960(+)
706191.PANA_1992(+)
706191.PANA_4107(+)
706191.PANA_4108+
706191.PANA_2564(+)
706191.PANA_2563(+)
706191.PANA_2986(+)
706191.PANA_1714(+)
706191.PANA_3293(+)
706191.PANA_3767(+)
706191.PANA_3769(+)
706191.PANA_3584(+)
706191.PANA_1615(+)
706191.PANA_1616(+)
706191.PANA_1618(+)
706191.PANA_0837(+)
706191.PANA_0830(+)
706191.PANA_0588(+)
706191.PANA_0012(+)
706191.PANA_0050(+)
706191.PANA_0053(+)
706191.PANA_4027(+)
706191.PANA_1875(+)
706191.PANA_2353(+)
706191.PANA_2190(+)
706191.PANA_3622(+)
706191.PANA_0136(+)
706191.PANA_0139(+)
706191.PANA_1661(+)
706191.PANA_0229(+)not used
706191.PANA_3935(+)
706191.PANA_4234(+)
706191.PANA_0919(+)
706191.PANA_0918(+)
706191.PANA_1083(+)
706191.PANA_4162(+)
706191.PANA_1213(+)
706191.PANA_1924(+)
706191.PANA_2324(+)
706191.PANA_2036(+)
706191.PANA_3103(+)
706191.PANA_0988(+)
706191.PANA_0989(+)
706191.PANA_3740(+)
706191.PANA_0699(+)
706191.PANA_0695(+)
706191.PANA_3327(+)
706191.PANA_3326(+)
706191.PANA_3321(+)
706191.PANA_1674(+)
706191.PANA_3924(+)not used
706191.PANA_0219(+)
706191.PANA_2300(+)
706191.PANA_0850(+)
706191.PANA_0070(+)
706191.PANA_1091(+)
706191.PANA_2683(+)
706191.PANA_1301(+)
706191.PANA_2333(+)
706191.PANA_1364(+)
706191.PANA_2207(+)
706191.PANA_3138(+)
706191.PANA_3003(+)
706191.PANA_0683(+)
706191.PANA_3799(+)
706191.PANA_3489(+)
706191.PANA_0440(+)
706191.PANA_3860(+)
706191.PANA_3262(+)
706191.PANA_0202(+)
706191.PANA_0206(+)
706191.PANA_1247(+)
706191.PANA_1242(+)
706191.PANA_0063(+)
706191.PANA_0062(+)
706191.PANA_0639(+)
706191.PANA_1338(+)
706191.PANA_1339(+)
706191.PANA_1938(+)
706191.PANA_0199(+)
706191.PANA_2017(+)
706191.PANA_1036(+)
706191.PANA_2650(+)
706191.PANA_2653(+)
706191.PANA_2309(+)
706191.PANA_3121(+)
706191.PANA_1188(+)
706191.PANA_3301(+)
706191.PANA_1653(+)
706191.PANA_3275(+)
706191.PANA_0274(+)
706191.PANA_4205(+)
706191.PANA_3657(+)
706191.PANA_4154(+)
706191.PANA_2043(+)
706191.PANA_2048(+)
706191.PANA_1467(+)
706191.PANA_0789(+)
706191.PANA_2006(+)
706191.PANA_1468(+)
706191.PANA_3066(+)
706191.PANA_0173(+)
706191.PANA_0469(+)
706191.PANA_3463(+)
706191.PANA_0797(+)
706191.PANA_0790(+)
706191.PANA_3311(+)
706191.PANA_0269(+)
706191.PANA_3848+
706191.PANA_0887(+)
706191.PANA_1282(+)
706191.PANA_1132(+)
706191.PANA_1357(+)
706191.PANA_0879(+)
706191.PANA_0450(+)
706191.PANA_2074(+)
706191.PANA_4149(+)
706191.PANA_3478(+)
706191.PANA_0259(+)
706191.PANA_4081(+)
706191.PANA_3851(+)
706191.PANA_0325(+)
706191.PANA_1025(+)
706191.PANA_2806(+)
706191.PANA_3085(+)
706191.PANA_2489(+)
706191.PANA_2667(+)
706191.PANA_2112(+)
706191.PANA_1326(+)
706191.PANA_3194(+)
706191.PANA_3250(+)
706191.PANA_3922(+)
706191.PANA_1922(+)
706191.PANA_1592(+)
706191.PANA_0350(+)
706191.PANA_0759(+)
706191.PANA_1975(+)
706191.PANA_2615(+)
706191.PANA_2610(+)
706191.PANA_2054(+)not used
706191.PANA_1077(+)
706191.PANA_3183(+)
706191.PANA_3452(+)
706191.PANA_2859(+)
706191.PANA_2833(+)
706191.PANA_0502(+)
706191.PANA_0296(+)
706191.PANA_0769(+)
706191.PANA_1105(+)
706191.PANA_4075(+)
706191.PANA_1567(+)
706191.PANA_4045(+)
706191.PANA_1363(+)
706191.PANA_2468(+)
706191.PANA_2913(+)
706191.PANA_2915(+)
706191.PANA_2282(+)
706191.PANA_0375(+)
706191.PANA_3616(+)
706191.PANA_2733(+)
706191.PANA_3560(+)
706191.PANA_3225(+)
706191.PANA_3229(+)
706191.PANA_0424(+)
706191.PANA_0513(+)
706191.PANA_3730(+)
706191.PANA_3734(+)
706191.PANA_3750(+)
706191.PANA_3555(+)
706191.PANA_1555+
706191.PANA_1004(+)
706191.PANA_1391(+)
706191.PANA_1202(+)
706191.PANA_2450(+)
706191.PANA_2927(+)
706191.PANA_2632(+)
706191.PANA_3259(+)
706191.PANA_3145(+)
706191.PANA_1119(+)
706191.PANA_3431(+)
706191.PANA_3093(+)
706191.PANA_1765(+)
706191.PANA_3948(+)not used
706191.PANA_0368(+)
706191.PANA_0369(+)
706191.PANA_0707(+)
706191.PANA_1161(+)
706191.PANA_1236(+)
706191.PANA_0658(+)
706191.PANA_1387(+)
706191.PANA_2443(+)
706191.PANA_2445(+)
706191.PANA_2449(+)
706191.PANA_1472(+)
706191.PANA_2719(+)
706191.PANA_1218(+)
706191.PANA_3391(+)
706191.PANA_0577(+)
706191.PANA_1972(+)
706191.PANA_3976(+)
706191.PANA_0177(+)
706191.PANA_0373(+)
706191.PANA_1626(+)
706191.PANA_1155(+)
706191.PANA_0007(+)
706191.PANA_2436(+)
706191.PANA_2383(+)
706191.PANA_2366(+)
706191.PANA_1632(+)
706191.PANA_3366(+)
706191.PANA_3638(+)
706191.PANA_2644(+)
706191.PANA_2167(+)
706191.PANA_2992(+)
706191.PANA_0546(+)
706191.PANA_3705(+)
706191.PANA_1703(+)
706191.PANA_0492(+)
706191.PANA_0270(+)
706191.PANA_0817(+)
706191.PANA_0722(+)
706191.PANA_3923(+)
706191.PANA_4172(+)
706191.PANA_0036(+)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: YES (FDR = 12.5 %)
    Estimated copy number = 0.3 (3/10 KEGG proteins)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================