Effective results for Enterobacter lignolyticus SCF1 (eggnog40)

Summary

Number of putative secreted proteins: 601
- Predicted by EffectiveT3: 148 (high confidence), 241 (low confidence)
- Predicted by EffectiveCCBD: 28 within, 26 before, 37 behind expected region 25..70aa
- Predicted by T4SEpre: 87
- Predicted by EffectiveELD: 16 eukaryotic-like domains, contained in 66 proteins (1 high, 65 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type III), (Type IV)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
701347.Entcl_2723		(>)		PF05512	mitochondrial
701347.Entcl_2241		+	+		ER
701347.Entcl_1063		+	+		(mitochondrial)
701347.Entcl_0576			+	(PF11380)	mitochondrial; (mitochondrial)
701347.Entcl_3119		(>)			ER
701347.Entcl_3115				(PF00854)	ER
701347.Entcl_4289				(PF01228) (PF02901)	(mitochondrial)
701347.Entcl_0295		(>)			ER
701347.Entcl_0909			+		ER
701347.Entcl_0635				(PF00345)	ER
701347.Entcl_0069			+		(ER); ER
701347.Entcl_0914		+			ER; (ER)
701347.Entcl_1888				(PF03222)	ER
701347.Entcl_2063		+			ER; (ER)
701347.Entcl_3001	+				mitochondrial; (mitochondrial)
701347.Entcl_3390			+		(mitochondrial)
701347.Entcl_2710	+				(mitochondrial); (plastid)
701347.Entcl_3536	+				(mitochondrial); mitochondrial
701347.Entcl_0723			+		ER
701347.Entcl_3914		(>)			ER
701347.Entcl_1382		(>)			mitochondrial
701347.Entcl_2276				(PF00345)	ER
701347.Entcl_2871		+			(ER)
701347.Entcl_4098			+		ER
701347.Entcl_1064				(PF00345)	ER
701347.Entcl_1608			+		ER
701347.Entcl_1604				(PF00577)	ER
701347.Entcl_1606				(PF00345)	ER
701347.Entcl_1603				(PF00345)	ER
701347.Entcl_2390				(PF03222)	(ER)
701347.Entcl_2464		(<)			ER
701347.Entcl_3023				(PF00345)	ER
701347.Entcl_3024				(PF00577)	(mitochondrial); mitochondrial
701347.Entcl_4426				(PF00345)	ER
701347.Entcl_4427				(PF00577)	ER
701347.Entcl_3282				(PF00345)	ER
701347.Entcl_3281				(PF00577)	ER; (ER)
701347.Entcl_4082		(>)			ER
701347.Entcl_0128				(PF05704)	(mitochondrial)
701347.Entcl_2652	+				(mitochondrial)
701347.Entcl_0896		(<)			(ER)
701347.Entcl_2815			+		ER
701347.Entcl_1296		(<)			ER
701347.Entcl_2254		+			ER
701347.Entcl_0630				(PF00345)	ER
701347.Entcl_0711				(PF00345)	ER
701347.Entcl_0712				(PF00577)	(ER); ER
701347.Entcl_0882				(PF03222)	(ER)
701347.Entcl_0889			+		(mitochondrial); plastid
701347.Entcl_1963		(>)			ER
701347.Entcl_3194			+		mitochondrial
701347.Entcl_2023			+		(ER)
701347.Entcl_2750				(PF00577)	ER
701347.Entcl_2751				(PF00345)	ER
701347.Entcl_4199			+		ER
701347.Entcl_0475		(>)			ER
701347.Entcl_1909	+				(mitochondrial); plastid
701347.Entcl_2766			+		ER
701347.Entcl_3360	+				mitochondrial
701347.Entcl_3740				(PF11380)	(mitochondrial)
701347.Entcl_1741				(PF10662)	mitochondrial
701347.Entcl_2822		(>)			ER; (ER)
701347.Entcl_1330		+			ER
701347.Entcl_3881		(>)			(ER)
701347.Entcl_2570				(PF03711)	(ER)
701347.Entcl_3081			+		ER
701347.Entcl_2682				(PF00345)	ER
701347.Entcl_3384		+			ER
701347.Entcl_1494		(>)			mitochondrial
701347.Entcl_1816		+			(ER)
701347.Entcl_2365			+		mitochondrial
701347.Entcl_2547			+		ER
701347.Entcl_3940			+		ER
701347.Entcl_3437		(>)			ER
701347.Entcl_0536				(PF03222)	ER; (ER)
701347.Entcl_0155			+		(mitochondrial)
701347.Entcl_2156				(PF00345)	ER
701347.Entcl_2157				(PF00577)	mitochondrial; (mitochondrial)
701347.Entcl_3848			+		(ER); ER
701347.Entcl_3449		+			ER
701347.Entcl_3441		+			(ER)
701347.Entcl_0320		+			ER
701347.Entcl_4000		+			(mitochondrial)
701347.Entcl_0237				(PF00854)	(ER)
701347.Entcl_1962			+		ER
701347.Entcl_3857				(PF00577)	ER
701347.Entcl_3858				(PF00345)	(ER)
701347.Entcl_0228				(PF00345)	ER
701347.Entcl_0225				(PF00345)	ER
701347.Entcl_0227				(PF00577)	ER
701347.Entcl_0180		(<)			ER; (ER)
701347.Entcl_0171			+		ER
701347.Entcl_1195				(PF00854)	ER
701347.Entcl_2404	+				mitochondrial; (mitochondrial)
701347.Entcl_3261		(>)			(ER)
701347.Entcl_3351		(>)			ER
701347.Entcl_3093			+		ER
701347.Entcl_0964			+		ER
701347.Entcl_0767	+				mitochondrial; (mitochondrial)
701347.Entcl_1189			+		ER
701347.Entcl_1986		+			ER
701347.Entcl_2617		+			ER
701347.Entcl_3670		(<)			ER
701347.Entcl_0776		(>)			(mitochondrial)
701347.Entcl_0111	+				(mitochondrial)
701347.Entcl_4043				(PF01228) (PF02901)
701347.Entcl_4049	+				(plastid)
701347.Entcl_1347	+				plastid
701347.Entcl_2880				(PF01228) (PF02901)
701347.Entcl_1409	+				(mitochondrial)
701347.Entcl_2845	(+)				ER
701347.Entcl_3719	+				(ER)
701347.Entcl_0383	+				(mitochondrial)
701347.Entcl_1870	(+)				(mitochondrial); (plastid)
701347.Entcl_2013	(+)				(mitochondrial); plastid
701347.Entcl_3385		+
701347.Entcl_4094		(>)			(mitochondrial)
701347.Entcl_3773	(+)				ER
701347.Entcl_2480			+		(ER)
701347.Entcl_3355			+		(mitochondrial)
701347.Entcl_3519				(PF03711) (PF01276)
701347.Entcl_4175	(+)				ER
701347.Entcl_0417			+		(mitochondrial)
701347.Entcl_3830	(+)				(ER)
701347.Entcl_0631				(PF00577)	(ER)
701347.Entcl_0668	(+)				(mitochondrial); (plastid)
701347.Entcl_2172	+				(mitochondrial)
701347.Entcl_3972	+		+
701347.Entcl_0763	+	(<)
701347.Entcl_0764	(+)				ER
701347.Entcl_1046	+				(plastid)
701347.Entcl_0197	(+)				ER
701347.Entcl_0191		+			(mitochondrial)
701347.Entcl_0931	(+)				(mitochondrial)
701347.Entcl_2681				(PF00577)	(mitochondrial)
701347.Entcl_3551				(PF03711) (PF01276)
701347.Entcl_1811	+				plastid
701347.Entcl_1818	+				plastid
701347.Entcl_2144	(+)				(mitochondrial)
701347.Entcl_4420		(<)	+
701347.Entcl_1943	+				(plastid)
701347.Entcl_0205	+				(ER)
701347.Entcl_2902	(+)				(ER); (mitochondrial)
701347.Entcl_1169	(+)				ER
701347.Entcl_1795	+				plastid
701347.Entcl_1781	(+)				mitochondrial
701347.Entcl_0780				(PF03711) (PF01276)
701347.Entcl_0160	+				(mitochondrial)
701347.Entcl_1306				(PF10662)	(mitochondrial)
701347.Entcl_0140	(+)				(ER)
701347.Entcl_4257		(<)			(mitochondrial)
701347.Entcl_1455			+		(plastid)
701347.Entcl_0188	(+)				ER
701347.Entcl_1141	(+)				mitochondrial; (mitochondrial)
701347.Entcl_1196				(PF03711) (PF01276)
701347.Entcl_2086	+				(plastid)
701347.Entcl_1699	+	(>)
701347.Entcl_0582	+			(PF03222)
701347.Entcl_0584	(+)			(PF01228) (PF02901)
701347.Entcl_1366		+			(mitochondrial)
701347.Entcl_3124	(+)			(PF03711) (PF01276)
701347.Entcl_3470		(>)			(ER)
701347.Entcl_0229	(+)				ER
701347.Entcl_4274	(+)				ER
701347.Entcl_4296				(PF01228) (PF02901)
701347.Entcl_4052				(PF03711) (PF01276)
701347.Entcl_0372	+	(>)
701347.Entcl_0255	(+)				(mitochondrial)
701347.Entcl_1732				(PF05034) (PF07476)
701347.Entcl_2993				(PF01228) (PF02901)
701347.Entcl_2196				(PF00854)
701347.Entcl_2609			+
701347.Entcl_4266		+
701347.Entcl_1500			+
701347.Entcl_1078	+
701347.Entcl_0740			+
701347.Entcl_0901				(PF05524)
701347.Entcl_2859	(+)				(ER)
701347.Entcl_1233	+
701347.Entcl_2291	+
701347.Entcl_1653		(>)
701347.Entcl_1654		(>)
701347.Entcl_0068		(>)
701347.Entcl_2456	+
701347.Entcl_3101	+
701347.Entcl_3070	+
701347.Entcl_3811	+
701347.Entcl_2705			+
701347.Entcl_1202		+
701347.Entcl_2882	+
701347.Entcl_1198	+
701347.Entcl_4144			+
701347.Entcl_1533	+
701347.Entcl_1404	+
701347.Entcl_2848			+
701347.Entcl_1867		(>)
701347.Entcl_2060		(<)
701347.Entcl_2441	+				not used
701347.Entcl_3545			+
701347.Entcl_3004	+
701347.Entcl_3399			+
701347.Entcl_2717	+
701347.Entcl_2714	+
701347.Entcl_3530	+
701347.Entcl_1553	+
701347.Entcl_4151	+
701347.Entcl_1520			+
701347.Entcl_0728	+
701347.Entcl_1380	+
701347.Entcl_1095		(<)
701347.Entcl_1093	+
701347.Entcl_0653	+
701347.Entcl_1256	+
701347.Entcl_2279	+
701347.Entcl_2273		+
701347.Entcl_2277				(PF00577)
701347.Entcl_1899	+
701347.Entcl_1671			+
701347.Entcl_1677	(+)				(ER)
701347.Entcl_1872	+
701347.Entcl_2387			+
701347.Entcl_2477			+
701347.Entcl_3706	(+)				(mitochondrial); not used
701347.Entcl_3019	+
701347.Entcl_3525	+
701347.Entcl_4090	(+)		+
701347.Entcl_4366	+
701347.Entcl_0806		(>)
701347.Entcl_1062			+
701347.Entcl_1065				(PF00577)
701347.Entcl_1261	+
701347.Entcl_1117	+
701347.Entcl_1116	(+)	+
701347.Entcl_3029	+
701347.Entcl_2736	+
701347.Entcl_0743		(>)
701347.Entcl_4390	+
701347.Entcl_0513			+
701347.Entcl_0517	+
701347.Entcl_4173	(+)				(mitochondrial)
701347.Entcl_1341	(+)				(mitochondrial)
701347.Entcl_0706	+
701347.Entcl_0897	+
701347.Entcl_2811	+
701347.Entcl_3062	+
701347.Entcl_0074	(+)				(mitochondrial)
701347.Entcl_0077	+
701347.Entcl_0076			+
701347.Entcl_0670	(+)				(mitochondrial); not used
701347.Entcl_0677		(<)
701347.Entcl_4112			+
701347.Entcl_1292			+
701347.Entcl_3834	+
701347.Entcl_0011	+
701347.Entcl_1103	+
701347.Entcl_1219		(>)
701347.Entcl_2102	(+)				(mitochondrial)
701347.Entcl_1336	+
701347.Entcl_1961			+
701347.Entcl_3189	+
701347.Entcl_3294	(+)	(<)
701347.Entcl_3297	+
701347.Entcl_3508				(PF05524)
701347.Entcl_0243	(+)		+
701347.Entcl_3334	+
701347.Entcl_0083	+
701347.Entcl_0249			+
701347.Entcl_0884	(+)		+
701347.Entcl_2801	+
701347.Entcl_0660	+
701347.Entcl_1919		(>)
701347.Entcl_1623	+
701347.Entcl_1828			+
701347.Entcl_1133			+
701347.Entcl_3195		+
701347.Entcl_3376	+
701347.Entcl_3375	+
701347.Entcl_3759	+
701347.Entcl_3579		+
701347.Entcl_3405		(>)
701347.Entcl_1042	+
701347.Entcl_0478	+
701347.Entcl_2839	+
701347.Entcl_1582	+
701347.Entcl_1904			+
701347.Entcl_3984	+
701347.Entcl_1834			+
701347.Entcl_2345	+
701347.Entcl_2346	(+)				(mitochondrial)
701347.Entcl_3186	+
701347.Entcl_3748		+
701347.Entcl_1747	(+)				(plastid)
701347.Entcl_2709	+
701347.Entcl_3229	+
701347.Entcl_1985		+
701347.Entcl_3992	+
701347.Entcl_1827	+
701347.Entcl_0193	(+)				(plastid)
701347.Entcl_0862			+
701347.Entcl_0154		(>)
701347.Entcl_0461			+
701347.Entcl_0998			+
701347.Entcl_2918	+
701347.Entcl_1932	(+)				(plastid)
701347.Entcl_1338				(PF05524)
701347.Entcl_2356		(<)
701347.Entcl_2223	+
701347.Entcl_4250		(>)
701347.Entcl_2597	+
701347.Entcl_2770		(<)
701347.Entcl_3314			+
701347.Entcl_3312	+
701347.Entcl_3770			+
701347.Entcl_3798	+
701347.Entcl_4206	+
701347.Entcl_0219	+
701347.Entcl_0323	+
701347.Entcl_0455	+
701347.Entcl_4141	+
701347.Entcl_0039			+
701347.Entcl_0528		(<)
701347.Entcl_1971	+
701347.Entcl_2687			+
701347.Entcl_1925	+
701347.Entcl_3302	+
701347.Entcl_3977	+
701347.Entcl_3319			+
701347.Entcl_3476		(>)
701347.Entcl_0445	+
701347.Entcl_0028	(+)				(ER)
701347.Entcl_0024		(>)
701347.Entcl_0538	+
701347.Entcl_2974	+
701347.Entcl_1178		(>)
701347.Entcl_2379	+
701347.Entcl_2555	+
701347.Entcl_2154			+
701347.Entcl_2155	(+)				(ER)
701347.Entcl_0117		(<)
701347.Entcl_3840		+
701347.Entcl_0492	+
701347.Entcl_0498	+
701347.Entcl_0546	+
701347.Entcl_4126		+
701347.Entcl_1761	+
701347.Entcl_0923	+
701347.Entcl_1167	+
701347.Entcl_1168				(PF01228)
701347.Entcl_2411	+
701347.Entcl_1247				(PF00854)
701347.Entcl_1716			+
701347.Entcl_2522	+
701347.Entcl_3210	+
701347.Entcl_3851	+
701347.Entcl_3457		(<)
701347.Entcl_3455				(PF05524)
701347.Entcl_1114			+
701347.Entcl_3321	+
701347.Entcl_1515	(+)				(ER)
701347.Entcl_1710		(<)
701347.Entcl_4100	+
701347.Entcl_2219	+
701347.Entcl_3077	+
701347.Entcl_1744		(>)
701347.Entcl_1140		(<)
701347.Entcl_0557	+
701347.Entcl_2954	+
701347.Entcl_0173			+
701347.Entcl_0175			+
701347.Entcl_1377		(<)
701347.Entcl_1373	+
701347.Entcl_1379	(+)				(mitochondrial)
701347.Entcl_2315	+
701347.Entcl_0689	+
701347.Entcl_3040		(<)
701347.Entcl_2629	+
701347.Entcl_3683		(>)
701347.Entcl_3687	(+)				plastid
701347.Entcl_0610			+
701347.Entcl_4063		(<)
701347.Entcl_1695	+
701347.Entcl_0583		(<)
701347.Entcl_0588	+
701347.Entcl_2782	+
701347.Entcl_2438	+
701347.Entcl_3763	(+)				(mitochondrial)
701347.Entcl_3826		(<)
701347.Entcl_3057	+
701347.Entcl_3127	+
701347.Entcl_3123			+
701347.Entcl_3697	+
701347.Entcl_3475		(>)
701347.Entcl_4292				(PF05524)
701347.Entcl_4295		(>)
701347.Entcl_1839	+
701347.Entcl_2348	+
701347.Entcl_0808	+
701347.Entcl_1128	(+)				(ER)
701347.Entcl_0973	+
701347.Entcl_3913	+
701347.Entcl_1124	+
701347.Entcl_3870			+
701347.Entcl_2997	+
701347.Entcl_0951	+
701347.Entcl_1730				(PF14330)
701347.Entcl_2336	+
701347.Entcl_2212	(+)	(<)
701347.Entcl_2427	(+)
701347.Entcl_3114	(+)
701347.Entcl_2607	(+)
701347.Entcl_3803	(+)
701347.Entcl_2510	(+)
701347.Entcl_3481	(+)
701347.Entcl_4264	(+)
701347.Entcl_4286	(+)
701347.Entcl_2423	(+)
701347.Entcl_1243	(+)
701347.Entcl_0748	(+)
701347.Entcl_0127	(+)
701347.Entcl_0637	(+)
701347.Entcl_1723	(+)
701347.Entcl_2292	(+)
701347.Entcl_3072	(+)
701347.Entcl_3655	(+)				not used
701347.Entcl_3656	(+)
701347.Entcl_2999	(+)
701347.Entcl_1535	(+)
701347.Entcl_0753	(+)
701347.Entcl_0134	(+)
701347.Entcl_1401	(+)
701347.Entcl_1246	(+)
701347.Entcl_2317	(+)
701347.Entcl_2651	(+)
701347.Entcl_1882	(+)
701347.Entcl_0029	(+)
701347.Entcl_4441	(+)
701347.Entcl_3876	(+)
701347.Entcl_0265	(+)
701347.Entcl_0435	(+)
701347.Entcl_1706	(+)
701347.Entcl_2011	(+)
701347.Entcl_2010	(+)
701347.Entcl_2120	(+)
701347.Entcl_3590	(+)
701347.Entcl_3633	(+)
701347.Entcl_4435	(+)
701347.Entcl_4433	(+)
701347.Entcl_3521	(+)
701347.Entcl_3528	(+)
701347.Entcl_4360	(+)
701347.Entcl_4369	(+)
701347.Entcl_1266	(+)
701347.Entcl_1265	(+)
701347.Entcl_4111	(+)
701347.Entcl_2007	(+)
701347.Entcl_3358	(+)
701347.Entcl_3516	(+)
701347.Entcl_3515	(+)
701347.Entcl_4398	(+)
701347.Entcl_4081	(+)
701347.Entcl_2656	(+)				not used
701347.Entcl_1476	(+)
701347.Entcl_0419	(+)
701347.Entcl_2810	(+)
701347.Entcl_1318	(+)
701347.Entcl_1272	(+)
701347.Entcl_1610	(+)
701347.Entcl_2721	(+)
701347.Entcl_2032	(+)
701347.Entcl_3039	(+)
701347.Entcl_2747	(+)
701347.Entcl_4415	(+)
701347.Entcl_3626	(+)
701347.Entcl_1809	(+)
701347.Entcl_0242	(+)
701347.Entcl_1445	(+)
701347.Entcl_0400	(+)
701347.Entcl_1590	(+)
701347.Entcl_0663	(+)
701347.Entcl_3745	(+)
701347.Entcl_0436	(+)
701347.Entcl_2110	(+)
701347.Entcl_3198	(+)
701347.Entcl_3973	(+)
701347.Entcl_3976	(+)
701347.Entcl_3570	(+)
701347.Entcl_4352	(+)
701347.Entcl_4194	(+)
701347.Entcl_0233	(+)
701347.Entcl_4003	(+)
701347.Entcl_0949	(+)
701347.Entcl_1595	(+)
701347.Entcl_0275	(+)
701347.Entcl_1045	(+)
701347.Entcl_0184	(+)
701347.Entcl_0870	(+)				not used
701347.Entcl_0874	(+)
701347.Entcl_0052	(+)
701347.Entcl_0692	(+)
701347.Entcl_2233	(+)
701347.Entcl_1120	(+)
701347.Entcl_2583	(+)
701347.Entcl_2562	(+)
701347.Entcl_3743	(+)
701347.Entcl_4215	(+)
701347.Entcl_3412	(+)
701347.Entcl_4324	(+)
701347.Entcl_1825	(+)
701347.Entcl_0042	(+)
701347.Entcl_0681	(+)
701347.Entcl_0684	(+)
701347.Entcl_1333	(+)
701347.Entcl_1334	(+)
701347.Entcl_0714	(+)
701347.Entcl_2222	(+)
701347.Entcl_1154	(+)
701347.Entcl_2772	(+)
701347.Entcl_1544	(+)
701347.Entcl_3425	(+)
701347.Entcl_0642	(+)
701347.Entcl_0641	(+)
701347.Entcl_3895	(+)
701347.Entcl_2542	(+)
701347.Entcl_3098	(+)
701347.Entcl_0007	(+)
701347.Entcl_3369	(+)
701347.Entcl_3788	(+)
701347.Entcl_3789	(+)
701347.Entcl_4301	(+)
701347.Entcl_4419	(+)
701347.Entcl_0207	(+)
701347.Entcl_0202	(+)
701347.Entcl_1791	(+)
701347.Entcl_1790	(+)
701347.Entcl_0843	(+)
701347.Entcl_0849	(+)
701347.Entcl_1009	(+)
701347.Entcl_4047	(+)
701347.Entcl_1316	(+)
701347.Entcl_4276	(+)
701347.Entcl_1958	(+)
701347.Entcl_3150	(+)
701347.Entcl_2796	(+)
701347.Entcl_3339	(+)
701347.Entcl_0525	(+)
701347.Entcl_4314	(+)
701347.Entcl_4315	(+)
701347.Entcl_4008	(+)
701347.Entcl_0304	(+)
701347.Entcl_0942	(+)
701347.Entcl_0783	(+)
701347.Entcl_0785	(+)
701347.Entcl_1017	(+)
701347.Entcl_1164	(+)
701347.Entcl_1492	(+)
701347.Entcl_1327	(+)
701347.Entcl_2412	(+)
701347.Entcl_2306	(+)
701347.Entcl_3145	(+)
701347.Entcl_3218	(+)
701347.Entcl_4072	(+)
701347.Entcl_2363	(+)
701347.Entcl_4106	(+)
701347.Entcl_0552	(+)
701347.Entcl_0550	(+)
701347.Entcl_2957	(+)
701347.Entcl_1378	(+)
701347.Entcl_1209	(+)
701347.Entcl_1753	(+)
701347.Entcl_2313	(+)
701347.Entcl_2310	(+)
701347.Entcl_3139	(+)
701347.Entcl_2628	(+)
701347.Entcl_3835	(+)
701347.Entcl_3467	(+)
701347.Entcl_4241	(+)
701347.Entcl_0821	(+)
701347.Entcl_0501	(+)
701347.Entcl_3831	(+)
701347.Entcl_0768	(+)
701347.Entcl_0817	(+)
701347.Entcl_1362	(+)
701347.Entcl_3760	(+)
701347.Entcl_2983	(+)
701347.Entcl_2322	(+)
701347.Entcl_2505	(+)
701347.Entcl_2058	(+)
701347.Entcl_3273	(+)
701347.Entcl_3270	(+)
701347.Entcl_3694	(+)
701347.Entcl_3673	(+)
701347.Entcl_3583	(+)
701347.Entcl_1954	(+)
701347.Entcl_1278	(+)
701347.Entcl_2781	(+)
701347.Entcl_0774	(+)
701347.Entcl_0114	(+)
701347.Entcl_0894	(+)
701347.Entcl_0950	(+)
701347.Entcl_1641	(+)
701347.Entcl_1643	(+)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveT3 predictions using new standard model 2.0.1 (PROTEINS.NEW.EFFECTIVET3)
• EffectiveT3 predictions using old standard model 1.0.1 (PROTEINS.OLD.EFFECTIVET3)
• EffectiveCCBD predictions (PROTEINS.CHAPERONES.TXT)
• T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
• T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: YES (FDR = 12.5 %)
  Estimated copy number = 0.5 (5/10 KEGG proteins)
• Functional Type IV secretion system: YES (FDR = 7.2 %)
  Estimated copy number = 0.0 (0/10 KEGG proteins)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================