Metamenu

Effective results for Bacillus cereus SJ1 (eggnog40)

Summary

Number of putative secreted proteins: 13
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 8 eukaryotic-like domains, contained in 13 proteins (2 high, 11 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
699184.BCSJ1_28057(PF00344)mitochondrial
699184.BCSJ1_17970(PF09991)ER
699184.BCSJ1_23099(PF08662)ER
699184.BCSJ1_02065(PF11070)ER
699184.BCSJ1_11338(PF13086)ER
699184.BCSJ1_17725(PF00344)mitochondrial
699184.BCSJ1_17965(PF09991)ER
699184.BCSJ1_26198PF00347not used
699184.BCSJ1_16040(PF09419)
699184.BCSJ1_11403(PF13086)
699184.BCSJ1_11333(PF13086)
699184.BCSJ1_28082PF00347
699184.BCSJ1_20053(PF02475)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================