Effective results for Desulfotomaculum nigrificans DSM 574 (eggnog40)

Summary

Number of putative secreted proteins: 100
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 27 eukaryotic-like domains, contained in 100 proteins (13 high, 87 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
696369.DesniDRAFT_0953				(PF10588) PF02906 PF02256 (PF12838)
696369.DesniDRAFT_0612				(PF00037) PF02906	(mitochondrial)
696369.DesniDRAFT_2009				(PF10588) PF02906 PF02256 (PF12838)
696369.DesniDRAFT_2014				PF02906 (PF12838)	(mitochondrial)
696369.DesniDRAFT_1331				(PF06541)	ER
696369.DesniDRAFT_0112				(PF00037)	(mitochondrial)
696369.DesniDRAFT_2421				(PF03601)	ER
696369.DesniDRAFT_1427				(PF10589) (PF12838) (PF01257)
696369.DesniDRAFT_2886				(PF00037)	ER; (ER)
696369.DesniDRAFT_2887				(PF06541)	ER
696369.DesniDRAFT_0393				(PF06032)	(ER)
696369.DesniDRAFT_0958				(PF10588) PF02906 PF02256
696369.DesniDRAFT_1947				(PF10588) PF02906 PF02256
696369.DesniDRAFT_1948				(PF10589) (PF12838) (PF01257)
696369.DesniDRAFT_1348				(PF03601)	ER
696369.DesniDRAFT_2800				(PF06032)	(ER)
696369.DesniDRAFT_1291				(PF01077) (PF12838)
696369.DesniDRAFT_0818				(PF05034) (PF07476)
696369.DesniDRAFT_1428				(PF10588) (PF12838)
696369.DesniDRAFT_1973				(PF10589) (PF00037)
696369.DesniDRAFT_0957				(PF10589) (PF01257)
696369.DesniDRAFT_0952				(PF10589) (PF00037)
696369.DesniDRAFT_1823				(PF00037) (PF12838)
696369.DesniDRAFT_0447				PF02906 PF02256
696369.DesniDRAFT_0307				PF02906 PF02256
696369.DesniDRAFT_2005				(PF01077) (PF12838)
696369.DesniDRAFT_2010				(PF10588) (PF12838)
696369.DesniDRAFT_1894				(PF10589) (PF00037)
696369.DesniDRAFT_0751				(PF01472)
696369.DesniDRAFT_1745				(PF02915)
696369.DesniDRAFT_1532				(PF12838)
696369.DesniDRAFT_0119				(PF13597)
696369.DesniDRAFT_0200				(PF01077)
696369.DesniDRAFT_0590				(PF12838)
696369.DesniDRAFT_0138				(PF13534)
696369.DesniDRAFT_2184				(PF02915)
696369.DesniDRAFT_1294				(PF03063)
696369.DesniDRAFT_1426				(PF01257)
696369.DesniDRAFT_2550				PF03071
696369.DesniDRAFT_2885				(PF13534)
696369.DesniDRAFT_0556				(PF12838)
696369.DesniDRAFT_0396				(PF06032)
696369.DesniDRAFT_0956				(PF01257)
696369.DesniDRAFT_0951				(PF01257)
696369.DesniDRAFT_2437				(PF14330)
696369.DesniDRAFT_2337				PF13513
696369.DesniDRAFT_0494				(PF02915)
696369.DesniDRAFT_0497				(PF12838)
696369.DesniDRAFT_0383				(PF00162)
696369.DesniDRAFT_1949				(PF01257)
696369.DesniDRAFT_2529				(PF13534)
696369.DesniDRAFT_1172				(PF09419)
696369.DesniDRAFT_1373				(PF12838)
696369.DesniDRAFT_1001				(PF01077)
696369.DesniDRAFT_0534				(PF06968)
696369.DesniDRAFT_1765				(PF02915)
696369.DesniDRAFT_1957				(PF03063)
696369.DesniDRAFT_1956				(PF01472)
696369.DesniDRAFT_1347				(PF03601)
696369.DesniDRAFT_2416				(PF03601)
696369.DesniDRAFT_0709				(PF06968)
696369.DesniDRAFT_0708				(PF06968)
696369.DesniDRAFT_1034				PF02002
696369.DesniDRAFT_0525				(PF06968)
696369.DesniDRAFT_1726				PF02906
696369.DesniDRAFT_0143				(PF00037)
696369.DesniDRAFT_0458				(PF00037)
696369.DesniDRAFT_1329				(PF12838)
696369.DesniDRAFT_2506				(PF01077)
696369.DesniDRAFT_2353				(PF03063)
696369.DesniDRAFT_2288				(PF03063)
696369.DesniDRAFT_1550				(PF01472)
696369.DesniDRAFT_0732				(PF00037)	not used
696369.DesniDRAFT_1020				(PF03601)
696369.DesniDRAFT_0196				(PF13597)
696369.DesniDRAFT_0462				(PF00162)
696369.DesniDRAFT_2340				(PF02915)
696369.DesniDRAFT_2769				(PF13597)
696369.DesniDRAFT_1838				(PF00037)
696369.DesniDRAFT_1837				(PF00037)
696369.DesniDRAFT_2111				(PF00037)
696369.DesniDRAFT_1827				(PF13534)
696369.DesniDRAFT_1824				(PF12838)
696369.DesniDRAFT_1821				(PF13534)
696369.DesniDRAFT_0409				(PF02915)
696369.DesniDRAFT_1217				(PF12838)
696369.DesniDRAFT_0302				PF02906
696369.DesniDRAFT_2132				(PF01969)
696369.DesniDRAFT_2310				(PF06541)
696369.DesniDRAFT_1687				(PF16760)
696369.DesniDRAFT_1206				(PF01969)
696369.DesniDRAFT_1209				(PF01969)	not used
696369.DesniDRAFT_0647				(PF12838)
696369.DesniDRAFT_1474				(PF01077)
696369.DesniDRAFT_1475				(PF01077)
696369.DesniDRAFT_2876				(PF13534)	not used
696369.DesniDRAFT_0653				(PF00037)
696369.DesniDRAFT_0650				(PF00037)
696369.DesniDRAFT_1895				(PF00037)
696369.DesniDRAFT_1893				(PF01257)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================