Effective results for Bartonella clarridgeiae 73 (eggnog40)

Summary

Number of putative secreted proteins: 51
- Predicted by T4SEpre: 55
- Predicted by EffectiveELD: 3 eukaryotic-like domains, contained in 14 proteins (0 high, 14 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
696125.BARCL_0290+(mitochondrial); (plastid)
696125.BARCL_0632(PF02661)(mitochondrial); plastid
696125.BARCL_1216+ER
696125.BARCL_1326+ER
696125.BARCL_0501+ER
696125.BARCL_0727(PF06455)ER
696125.BARCL_0385+(mitochondrial)
696125.BARCL_1333+ER
696125.BARCL_0882+ER
696125.BARCL_0715+(ER)
696125.BARCL_1063+ER
696125.BARCL_0630+(PF02661)
696125.BARCL_0631+(PF02661)
696125.BARCL_0640+(PF02661)
696125.BARCL_0139+(mitochondrial)
696125.BARCL_0138+(ER)
696125.BARCL_0629+(PF02661)
696125.BARCL_1284+
696125.BARCL_0202+
696125.BARCL_0740+
696125.BARCL_0635(PF02661)
696125.BARCL_0069(PF02661)
696125.BARCL_0398+
696125.BARCL_0960(PF02661)
696125.BARCL_1213+
696125.BARCL_1392+
696125.BARCL_1327+
696125.BARCL_0605(PF05704)
696125.BARCL_1031(PF02661)
696125.BARCL_1255+
696125.BARCL_1256+
696125.BARCL_1179+
696125.BARCL_1105+
696125.BARCL_0914+
696125.BARCL_0262(PF02661)
696125.BARCL_1203+
696125.BARCL_1249+
696125.BARCL_1246+
696125.BARCL_0884+
696125.BARCL_1342+
696125.BARCL_1062+
696125.BARCL_0992+
696125.BARCL_0988+
696125.BARCL_1117+
696125.BARCL_0639(PF02661)
696125.BARCL_1305+
696125.BARCL_0977+
696125.BARCL_0489+
696125.BARCL_0481+
696125.BARCL_0245(PF02661)
696125.BARCL_0480+

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 2.0 (20/10 KEGG proteins)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================