Effective results for Citromicrobium bathyomarinum JL354 (eggnog40)

Summary

Number of putative secreted proteins: 31
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 15 eukaryotic-like domains, contained in 31 proteins (2 high, 29 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
685035.CbatJ_010100006086				(PF03209)	ER
685035.CbatJ_010100006096				(PF03073)	ER
685035.CbatJ_010100006111				(PF00124)	ER
685035.CbatJ_010100006036				(PF03209)	ER
685035.CbatJ_010100011741				PF10520	ER
685035.CbatJ_010100015555				(PF00394)	mitochondrial
685035.CbatJ_010100008784				(PF03073)	ER
685035.CbatJ_010100009521				(PF06455)	ER
685035.CbatJ_010100002990				(PF03073)	ER; mitochondrial
685035.CbatJ_010100016047				(PF00394)	not used
685035.CbatJ_010100013086				(PF13661)
685035.CbatJ_010100008499				(PF00124)
685035.CbatJ_010100013091				(PF13759)
685035.CbatJ_010100008494				(PF00124)
685035.CbatJ_010100016062				(PF00394)
685035.CbatJ_010100013448				(PF00394)
685035.CbatJ_010100000240				(PF02933)
685035.CbatJ_010100015997				(PF00394)	not used
685035.CbatJ_010100010171				(PF05019)
685035.CbatJ_010100010756				PF01231
685035.CbatJ_010100006106				(PF00124)
685035.CbatJ_010100009936				(PF13759)
685035.CbatJ_010100005285				(PF14832)
685035.CbatJ_010100002130				(PF10013)	not used
685035.CbatJ_010100003445				(PF13759)
685035.CbatJ_010100003335				(PF05019)
685035.CbatJ_010100016157				(PF00394)	not used
685035.CbatJ_010100015545				(PF00305)
685035.CbatJ_010100016002				(PF00394)	not used
685035.CbatJ_010100013528				(PF13872)	not used
685035.CbatJ_010100016302				(PF13872)	not used

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================