Effective results for alpha proteobacterium HIMB114 (eggnog40)

Summary

Number of putative secreted proteins: 24
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 14 eukaryotic-like domains, contained in 24 proteins (7 high, 17 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
684719.HIMB114_1441				(PF10517)	ER
684719.HIMB114_0016				(PF00622)	(mitochondrial); (plastid)
684719.HIMB114_0015				PF07460	(mitochondrial)
684719.HIMB114_0230				(PF08491)	ER
684719.HIMB114_0437				(PF01036)	ER
684719.HIMB114_0886				(PF01036)	(mitochondrial); (plastid)
684719.HIMB114_0069				PF03092	ER
684719.HIMB114_0049				(PF10517)	ER
684719.HIMB114_0709				(PF06455)	ER
684719.HIMB114_0377				(PF04519)
684719.HIMB114_0376				(PF04519)
684719.HIMB114_1446				(PF14342)
684719.HIMB114_0963				(PF04519)
684719.HIMB114_1287				(PF10013)	not used
684719.HIMB114_0083				PF00380
684719.HIMB114_0085				PF00572
684719.HIMB114_0468				(PF13507)
684719.HIMB114_0054				(PF14342)
684719.HIMB114_0844				(PF04519)
684719.HIMB114_0597				PF00572
684719.HIMB114_0598				PF00380
684719.HIMB114_0610				(PF05637)
684719.HIMB114_1458				(PF13507)	not used
684719.HIMB114_0105				PF03092	not used

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================