Metamenu

Effective results for Vibrio coralliilyticus ATCC BAA-450 (eggnog40)

Summary

Number of putative secreted proteins: 694
- Predicted by EffectiveT3: 240 (high confidence), 337 (low confidence)
- Predicted by EffectiveCCBD: 28 within, 24 before, 59 behind expected region 25..70aa
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 17 eukaryotic-like domains, contained in 29 proteins (3 high, 26 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type III, Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
675814.VIC_004156+ER
675814.VIC_000341+(mitochondrial); mitochondrial
675814.VIC_001093(<)(mitochondrial)
675814.VIC_001359+ER
675814.VIC_000925(>)ER
675814.VIC_002374(<)ER
675814.VIC_002329+ER
675814.VIC_001006+mitochondrial
675814.VIC_003368PF14479(mitochondrial)
675814.VIC_003970(PF08180)ER
675814.VIC_001188+ER
675814.VIC_003536+ER
675814.VIC_000242+(ER)
675814.VIC_004549+ER
675814.VIC_001455+ER
675814.VIC_004009(<)ER; (ER)
675814.VIC_002653(PF00909)ER
675814.VIC_004779+ER
675814.VIC_005033(>)ER
675814.VIC_002365(>)ER
675814.VIC_003311(>)ER
675814.VIC_002864+ER
675814.VIC_004942(>)ER
675814.VIC_002661+ER
675814.VIC_003383+ER
675814.VIC_002526+(mitochondrial); plastid
675814.VIC_003443(<)ER
675814.VIC_000834(PF00909)ER
675814.VIC_001128(>)(mitochondrial)
675814.VIC_002849(+)(>)ER
675814.VIC_001640+ER
675814.VIC_001730+ER
675814.VIC_004194(PF05023)ER
675814.VIC_004864+ER; (ER)
675814.VIC_002479+ER
675814.VIC_004469(>)ER
675814.VIC_002828(PF08329)(ER)
675814.VIC_004617(>)ER
675814.VIC_004164(>)ER
675814.VIC_002258(>)ER
675814.VIC_003473+(ER); ER
675814.VIC_001561(>)(ER)
675814.VIC_001682+(ER)
675814.VIC_003461(>)ER
675814.VIC_003469(PF00909)ER
675814.VIC_000420(PF01117)ER
675814.VIC_001827(<)(mitochondrial)
675814.VIC_000880(>)ER
675814.VIC_002477(<)ER
675814.VIC_000163+ER; (ER)
675814.VIC_003329(>)ER
675814.VIC_001643(>)ER
675814.VIC_000732(<)mitochondrial; (mitochondrial)
675814.VIC_005069+(mitochondrial)
675814.VIC_004320+ER
675814.VIC_004878(>)ER
675814.VIC_001554(>)ER
675814.VIC_000201+(ER); (plastid)
675814.VIC_003541(<)mitochondrial
675814.VIC_001630PF16683ER
675814.VIC_004514(>)ER
675814.VIC_000320+plastid
675814.VIC_000044+(>)
675814.VIC_000465(<)mitochondrial; not used
675814.VIC_002367+(<)
675814.VIC_002566(+)(ER); (plastid)
675814.VIC_004089+(PF00909)
675814.VIC_000116+plastid
675814.VIC_001063+plastid
675814.VIC_001292(+)ER
675814.VIC_002956(+)(ER)
675814.VIC_003449+(plastid)
675814.VIC_001285(+)ER
675814.VIC_003072+(mitochondrial)
675814.VIC_001845(+)(mitochondrial)
675814.VIC_002391(+)ER; (ER)
675814.VIC_001880+(plastid)
675814.VIC_001881+plastid
675814.VIC_000015+plastid
675814.VIC_004028+(plastid)
675814.VIC_000529+(ER)
675814.VIC_001472(+)(ER)
675814.VIC_003437(+)ER
675814.VIC_003647(+)(mitochondrial)
675814.VIC_001137(+)mitochondrial; (mitochondrial)
675814.VIC_001056++
675814.VIC_002850+(mitochondrial)
675814.VIC_003091(+)ER
675814.VIC_002277+(ER)
675814.VIC_000500(+)ER
675814.VIC_000504(+)mitochondrial
675814.VIC_004738+plastid
675814.VIC_001818(+)(mitochondrial)
675814.VIC_002101+(mitochondrial)
675814.VIC_001104(+)(mitochondrial)
675814.VIC_002825(+)(mitochondrial)
675814.VIC_004182+(plastid)
675814.VIC_004989+plastid
675814.VIC_002443(+)mitochondrial; (mitochondrial)
675814.VIC_001932+(ER)
675814.VIC_004237(+)mitochondrial; (mitochondrial)
675814.VIC_004065(+)ER
675814.VIC_000743(+)(ER)
675814.VIC_003273+(PF00031)
675814.VIC_003991(+)ER
675814.VIC_001680(+)ER
675814.VIC_000177+(mitochondrial)
675814.VIC_004567+(mitochondrial)
675814.VIC_003044+(plastid)
675814.VIC_000950(+)ER
675814.VIC_000319+plastid
675814.VIC_003247+(plastid)
675814.VIC_003454(+)ER
675814.VIC_003210(+)mitochondrial; (mitochondrial)
675814.VIC_001781(+)(PF02696)(mitochondrial)
675814.VIC_000543(+)ER
675814.VIC_002146+(plastid)
675814.VIC_000304+(plastid)
675814.VIC_004757++
675814.VIC_001797(+)(mitochondrial)
675814.VIC_004929+(plastid)
675814.VIC_004509+plastid
675814.VIC_004432+(ER)
675814.VIC_001112(+)ER
675814.VIC_000161+(plastid)
675814.VIC_004705(+)(ER)
675814.VIC_003544+(>)
675814.VIC_003546+(plastid)
675814.VIC_001867(>)(mitochondrial)
675814.VIC_000920(>)
675814.VIC_003952+
675814.VIC_002979+
675814.VIC_003527+
675814.VIC_004358(+)(plastid)
675814.VIC_000213+
675814.VIC_000217+
675814.VIC_000630+
675814.VIC_002992+
675814.VIC_002997(+)(plastid)
675814.VIC_003228+
675814.VIC_003221(<)
675814.VIC_002578+
675814.VIC_002112(>)
675814.VIC_003173(PF00909)
675814.VIC_000666(PF00677)
675814.VIC_004137+
675814.VIC_002681(<)
675814.VIC_001083+
675814.VIC_001846(+)(ER)
675814.VIC_004692(PF02696)
675814.VIC_004693(<)not used
675814.VIC_001009+
675814.VIC_004524+
675814.VIC_001005+
675814.VIC_004348+
675814.VIC_000123(+)(ER)
675814.VIC_000186(+)(ER)
675814.VIC_000054+
675814.VIC_004971+
675814.VIC_004970(+)(plastid)
675814.VIC_003365(>)
675814.VIC_003361(>)
675814.VIC_003101(+)(>)
675814.VIC_000672(+)(PF06500)
675814.VIC_002565+
675814.VIC_002568+
675814.VIC_002569(<)
675814.VIC_002740(+)(ER)
675814.VIC_002320(<)
675814.VIC_002699+
675814.VIC_004758(+)(plastid)
675814.VIC_003803(+)(mitochondrial)
675814.VIC_004598+
675814.VIC_004591+
675814.VIC_003972+
675814.VIC_001182(+)(ER)
675814.VIC_004377(+)+
675814.VIC_000874+
675814.VIC_004573(PF02696)
675814.VIC_001052+
675814.VIC_001059+
675814.VIC_001058+
675814.VIC_004138(>)
675814.VIC_000113+
675814.VIC_000111(>)
675814.VIC_000115+
675814.VIC_001663+
675814.VIC_004662(+)+
675814.VIC_002350(+)(PF08329)
675814.VIC_002426+
675814.VIC_004049+
675814.VIC_003115(>)
675814.VIC_004048+
675814.VIC_001999+
675814.VIC_004742+
675814.VIC_000396+
675814.VIC_002735+
675814.VIC_004177+
675814.VIC_002950+
675814.VIC_003254+
675814.VIC_003748(>)
675814.VIC_003348+
675814.VIC_001674(>)
675814.VIC_001673+
675814.VIC_002432+
675814.VIC_003637+
675814.VIC_002239(PF08975)
675814.VIC_004664+
675814.VIC_004246+
675814.VIC_002487+
675814.VIC_002310+
675814.VIC_002573+
675814.VIC_001079(PF07700)
675814.VIC_002880+
675814.VIC_003314+
675814.VIC_001599(<)
675814.VIC_001448(PF07700)
675814.VIC_000008+
675814.VIC_002861(<)
675814.VIC_005038+
675814.VIC_004016+
675814.VIC_004017+
675814.VIC_004015+
675814.VIC_003287+
675814.VIC_003282+
675814.VIC_001664+
675814.VIC_003131+
675814.VIC_000622+
675814.VIC_002085+
675814.VIC_001133+
675814.VIC_004760(>)
675814.VIC_004360+not used
675814.VIC_005017+
675814.VIC_004542+
675814.VIC_003831(>)
675814.VIC_001042+
675814.VIC_001278+not used
675814.VIC_000016+
675814.VIC_000011+
675814.VIC_002878+
675814.VIC_001380+
675814.VIC_001383+
675814.VIC_004466+
675814.VIC_001496+
675814.VIC_003434+
675814.VIC_002093(>)
675814.VIC_003655PF00644
675814.VIC_002417(>)
675814.VIC_000528+
675814.VIC_004713(<)
675814.VIC_002091+
675814.VIC_003386(>)
675814.VIC_000369+
675814.VIC_005008(>)
675814.VIC_002938+
675814.VIC_002933+
675814.VIC_001120+
675814.VIC_004140(PF00677)
675814.VIC_001450+
675814.VIC_001268+
675814.VIC_004032+
675814.VIC_004037(>)
675814.VIC_000020(>)
675814.VIC_002847+
675814.VIC_001486(<)
675814.VIC_001645+
675814.VIC_001646(+)(<)
675814.VIC_001648+
675814.VIC_003429+
675814.VIC_004853+
675814.VIC_001731(+)plastid
675814.VIC_004704+
675814.VIC_001865+
675814.VIC_004635+
675814.VIC_002281+
675814.VIC_002289+
675814.VIC_003967(+)(>)
675814.VIC_003965+
675814.VIC_003741+
675814.VIC_001134+
675814.VIC_004730+
675814.VIC_001251+
675814.VIC_002854+not used
675814.VIC_004282+
675814.VIC_000723+
675814.VIC_003702+
675814.VIC_003700(PF06500)
675814.VIC_003705+not used
675814.VIC_000612+
675814.VIC_000619+
675814.VIC_003076+
675814.VIC_004868(PF09458)
675814.VIC_004739+
675814.VIC_001813(<)
675814.VIC_001812(+)(mitochondrial)
675814.VIC_002103+
675814.VIC_004601+
675814.VIC_002296+
675814.VIC_002297+
675814.VIC_002295+
675814.VIC_005020+
675814.VIC_002915(+)(plastid)
675814.VIC_003510+
675814.VIC_002916+
675814.VIC_004053+
675814.VIC_004050+
675814.VIC_004295+
675814.VIC_004290(PF00677)
675814.VIC_004820+
675814.VIC_003249+
675814.VIC_000192+
675814.VIC_001701(>)
675814.VIC_003062(+)+
675814.VIC_002590(>)
675814.VIC_003663+
675814.VIC_004877+
675814.VIC_004872(>)
675814.VIC_002624+
675814.VIC_000382+
675814.VIC_002135+
675814.VIC_004234+
675814.VIC_001435+not used
675814.VIC_003875(PF08732)
675814.VIC_002781+
675814.VIC_000748+
675814.VIC_002454+
675814.VIC_003475+
675814.VIC_004171+
675814.VIC_003187+
675814.VIC_002458+
675814.VIC_000581(>)
675814.VIC_000413+
675814.VIC_000987+
675814.VIC_003082+
675814.VIC_002935(+)(plastid)
675814.VIC_002806+
675814.VIC_002040+
675814.VIC_001773(>)
675814.VIC_003048(>)
675814.VIC_003682+
675814.VIC_000670+
675814.VIC_000428+
675814.VIC_002441(>)
675814.VIC_001993+
675814.VIC_003847(>)
675814.VIC_001915+
675814.VIC_000477+
675814.VIC_001143+
675814.VIC_002309+not used
675814.VIC_001390+
675814.VIC_000881+
675814.VIC_002579+
675814.VIC_001175(PF06042)
675814.VIC_002926(+)(>)
675814.VIC_002923+
675814.VIC_004305(>)
675814.VIC_000317+
675814.VIC_000311(+)(plastid)
675814.VIC_000313+
675814.VIC_001077(+)ER; not used
675814.VIC_001546(>)
675814.VIC_000097+
675814.VIC_000095+
675814.VIC_004932+
675814.VIC_004935(<)
675814.VIC_002328+
675814.VIC_002324+
675814.VIC_000438(+)(plastid)
675814.VIC_003086+
675814.VIC_004755(+)(plastid)
675814.VIC_004648+
675814.VIC_000944+
675814.VIC_000898(>)
675814.VIC_002955+
675814.VIC_001446+
675814.VIC_004167+
675814.VIC_001205(+)(ER)
675814.VIC_003019(>)
675814.VIC_004336+
675814.VIC_004333+
675814.VIC_004332+
675814.VIC_000309(+)plastid
675814.VIC_000306(>)
675814.VIC_000301+
675814.VIC_002491(+)(plastid)
675814.VIC_003129+
675814.VIC_000087+
675814.VIC_001878+
675814.VIC_003335+
675814.VIC_001837+
675814.VIC_003864+
675814.VIC_004926+
675814.VIC_003538+
675814.VIC_003343+
675814.VIC_002811+
675814.VIC_003158+
675814.VIC_000443+
675814.VIC_002777+
675814.VIC_003267+
675814.VIC_002705+
675814.VIC_004862+
675814.VIC_001369+not used
675814.VIC_000335+
675814.VIC_003945+
675814.VIC_004225(PF06042)
675814.VIC_004228(>)
675814.VIC_002764+
675814.VIC_000145+
675814.VIC_001363(+)(mitochondrial)
675814.VIC_003301+
675814.VIC_001529(+)(mitochondrial)
675814.VIC_001360+
675814.VIC_001057+
675814.VIC_002014+
675814.VIC_002011(+)+
675814.VIC_003160+
675814.VIC_002300+
675814.VIC_002302+
675814.VIC_002626(+)(<)
675814.VIC_003496(>)
675814.VIC_002768+
675814.VIC_002769+
675814.VIC_002165(+)(<)
675814.VIC_001879(+)(plastid)
675814.VIC_003820(+)not used
675814.VIC_004633(+)
675814.VIC_004689(+)
675814.VIC_002974(+)
675814.VIC_001427(+)
675814.VIC_000682(+)
675814.VIC_001711(+)
675814.VIC_003796(+)
675814.VIC_003006(+)
675814.VIC_001622(+)
675814.VIC_002371(+)
675814.VIC_002754(+)
675814.VIC_002200(+)
675814.VIC_002192(+)
675814.VIC_002194(+)
675814.VIC_003813(+)not used
675814.VIC_004262(+)
675814.VIC_002710(+)
675814.VIC_000913(+)not used
675814.VIC_000869(+)
675814.VIC_004346(+)
675814.VIC_004343(+)
675814.VIC_004200(+)
675814.VIC_000269(+)
675814.VIC_000124(+)
675814.VIC_003895(+)
675814.VIC_002985(+)
675814.VIC_000698(+)
675814.VIC_000690(+)
675814.VIC_001506(+)
675814.VIC_001504(+)
675814.VIC_003768(+)
675814.VIC_003107(+)
675814.VIC_003611(+)
675814.VIC_002695(+)
675814.VIC_003587(+)
675814.VIC_001985(+)
675814.VIC_004751(+)
675814.VIC_004835(+)
675814.VIC_004590(+)
675814.VIC_003572(+)
675814.VIC_003973(+)
675814.VIC_001189(+)not used
675814.VIC_001183(+)
675814.VIC_000904(+)
675814.VIC_001500(+)
675814.VIC_000117(+)
675814.VIC_003051(+)
675814.VIC_004813(+)
675814.VIC_003778(+)
675814.VIC_003777(+)
675814.VIC_004965(+)
675814.VIC_003379(+)
675814.VIC_000645(+)
675814.VIC_000482(+)
675814.VIC_000485(+)
675814.VIC_004887(+)
675814.VIC_003597(+)
675814.VIC_004749(+)
675814.VIC_003935(+)
675814.VIC_004366(+)
675814.VIC_000803(+)
675814.VIC_001406(+)
675814.VIC_000146(+)
675814.VIC_003749(+)
675814.VIC_002438(+)
675814.VIC_004951(+)
675814.VIC_003633(+)
675814.VIC_002233(+)
675814.VIC_002652(+)
675814.VIC_004778(+)
675814.VIC_002062(+)
675814.VIC_000817(+)
675814.VIC_004395(+)
675814.VIC_004397(+)
675814.VIC_000811(+)
675814.VIC_001374(+)
675814.VIC_004554(+)
675814.VIC_001728(+)
675814.VIC_004154(+)
675814.VIC_001443(+)
675814.VIC_003288(+)
675814.VIC_003284(+)
675814.VIC_003753(+)
675814.VIC_000714(+)not used
675814.VIC_003137(+)
675814.VIC_002086(+)
675814.VIC_003620(+)
675814.VIC_000539(+)not used
675814.VIC_002663(+)
675814.VIC_003926(+)
675814.VIC_004497(+)
675814.VIC_000507(+)
675814.VIC_004388(+)
675814.VIC_002896(+)
675814.VIC_004368(+)
675814.VIC_002873(+)
675814.VIC_001381(+)
675814.VIC_004027(+)
675814.VIC_004024(+)
675814.VIC_001650(+)
675814.VIC_004845(+)
675814.VIC_004841(+)
675814.VIC_002521(+)
675814.VIC_002092(+)
675814.VIC_001714(+)
675814.VIC_002251(+)
675814.VIC_001873(+)
675814.VIC_002418(+)
675814.VIC_002678(+)
675814.VIC_004711(+)
675814.VIC_003209(+)
675814.VIC_004719(+)not used
675814.VIC_002831(+)
675814.VIC_003535(+)
675814.VIC_002550(+)
675814.VIC_003732(+)
675814.VIC_001481(+)
675814.VIC_003392(+)
675814.VIC_003427(+)
675814.VIC_003641(+)
675814.VIC_002263(+)
675814.VIC_002600(+)
675814.VIC_001356(+)
675814.VIC_002255(+)
675814.VIC_002029(+)
675814.VIC_002002(+)
675814.VIC_002287(+)
675814.VIC_003966(+)
675814.VIC_001212(+)
675814.VIC_002963(+)
675814.VIC_004047(+)
675814.VIC_004287(+)
675814.VIC_004288(+)
675814.VIC_003708(+)
675814.VIC_002315(+)
675814.VIC_003073(+)
675814.VIC_002077(+)
675814.VIC_003670(+)
675814.VIC_002473(+)
675814.VIC_004442(+)
675814.VIC_000229(+)
675814.VIC_002617(+)
675814.VIC_001810(+)
675814.VIC_004607(+)
675814.VIC_001325(+)
675814.VIC_002294(+)
675814.VIC_004098(+)
675814.VIC_001031(+)
675814.VIC_003083(+)
675814.VIC_005022(+)
675814.VIC_002703(+)
675814.VIC_003930(+)
675814.VIC_004097(+)
675814.VIC_004995(+)
675814.VIC_000349(+)
675814.VIC_002439(+)
675814.VIC_003241(+)
675814.VIC_003713(+)
675814.VIC_003400(+)
675814.VIC_001754(+)
675814.VIC_000653(+)
675814.VIC_003662(+)
675814.VIC_004873(+)
675814.VIC_002078(+)
675814.VIC_000401(+)
675814.VIC_000831(+)
675814.VIC_004616(+)
675814.VIC_004619(+)
675814.VIC_004119(+)not used
675814.VIC_005054(+)
675814.VIC_000975(+)
675814.VIC_000979(+)
675814.VIC_003984(+)
675814.VIC_001113(+)
675814.VIC_004474(+)
675814.VIC_002782(+)
675814.VIC_000370(+)
675814.VIC_000848(+)
675814.VIC_001344(+)
675814.VIC_003278(+)
675814.VIC_003470(+)
675814.VIC_001564(+)
675814.VIC_000566(+)
675814.VIC_002637(+)
675814.VIC_003888(+)
675814.VIC_001834+
675814.VIC_004898(+)
675814.VIC_002126(+)
675814.VIC_004667(+)
675814.VIC_003691(+)
675814.VIC_004221(+)
675814.VIC_001222(+)
675814.VIC_001223(+)
675814.VIC_000364(+)
675814.VIC_004075(+)
675814.VIC_002522(+)
675814.VIC_000178(+)
675814.VIC_000173(+)
675814.VIC_000172(+)
675814.VIC_001578(+)
675814.VIC_001579(+)
675814.VIC_001777(+)
675814.VIC_003045(+)
675814.VIC_002022(+)
675814.VIC_004895(+)
675814.VIC_000559(+)
675814.VIC_002482(+)
675814.VIC_002335(+)
675814.VIC_002539(+)
675814.VIC_004674(+)
675814.VIC_004671(+)
675814.VIC_004679(+)
675814.VIC_001919(+)
675814.VIC_005074(+)
675814.VIC_005078(+)
675814.VIC_003859(+)
675814.VIC_003858(+)
675814.VIC_003070(+)
675814.VIC_000958(+)
675814.VIC_004251(+)
675814.VIC_002920(+)
675814.VIC_003157(+)
675814.VIC_000318(+)
675814.VIC_004241(+)
675814.VIC_002535(+)
675814.VIC_004418(+)
675814.VIC_001177(+)
675814.VIC_001174(+)
675814.VIC_003457(+)
675814.VIC_003455(+)
675814.VIC_004931(+)
675814.VIC_001214(+)
675814.VIC_000983(+)
675814.VIC_002148(+)not used
675814.VIC_001965(+)
675814.VIC_004799(+)
675814.VIC_004797(+)
675814.VIC_004793(+)
675814.VIC_004427(+)
675814.VIC_000941(+)
675814.VIC_003189(+)
675814.VIC_001209(+)
675814.VIC_004160(+)
675814.VIC_001449(+)
675814.VIC_003121(+)
675814.VIC_003256(+)
675814.VIC_000155(+)
675814.VIC_000151(+)
675814.VIC_002546(+)
675814.VIC_002547(+)
675814.VIC_001550(+)
675814.VIC_002000(+)
675814.VIC_003150(+)
675814.VIC_003154(+)
675814.VIC_002778(+)
675814.VIC_002170(+)
675814.VIC_004754(+)
675814.VIC_003837(+)
675814.VIC_002461(+)
675814.VIC_004756(+)
675814.VIC_002511(+)
675814.VIC_000933(+)
675814.VIC_001931(+)
675814.VIC_002472(+)
675814.VIC_000208(+)
675814.VIC_001787(+)
675814.VIC_002012(+)
675814.VIC_003490(+)
675814.VIC_001893(+)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: YES (FDR = 12.5 %)
    Estimated copy number = 2.6 (26/10 KEGG proteins)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 1.5 (12/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================