Effective results for Serratia odorifera DSM 4582 (eggnog40)

Summary

Number of putative secreted proteins: 655
- Predicted by EffectiveT3: 173 (high confidence), 306 (low confidence)
- Predicted by EffectiveCCBD: 28 within, 24 before, 51 behind expected region 25..70aa
- Predicted by T4SEpre: 84
- Predicted by EffectiveELD: 11 eukaryotic-like domains, contained in 18 proteins (1 high, 17 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type III), (Type IV), Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
667129.HMPREF0758_3570			+		ER
667129.HMPREF0758_2584	+				ER
667129.HMPREF0758_3410		(>)			mitochondrial
667129.HMPREF0758_4861		(>)			ER
667129.HMPREF0758_2587			+		ER
667129.HMPREF0758_4882		+			(ER)
667129.HMPREF0758_4050			+		(mitochondrial)
667129.HMPREF0758_3061			+		ER
667129.HMPREF0758_2594			+		ER
667129.HMPREF0758_0579		(<)			mitochondrial
667129.HMPREF0758_0418			+		ER
667129.HMPREF0758_5054		+			ER
667129.HMPREF0758_3988		(>)			ER
667129.HMPREF0758_0183		(>)			(ER)
667129.HMPREF0758_3187			+		ER
667129.HMPREF0758_0413			+		(mitochondrial)
667129.HMPREF0758_0218			+		(mitochondrial)
667129.HMPREF0758_5042		(<)			ER
667129.HMPREF0758_4312	+				(mitochondrial); plastid
667129.HMPREF0758_4319		(>)			ER
667129.HMPREF0758_4073	+				ER
667129.HMPREF0758_4868		(>)			(ER); ER
667129.HMPREF0758_1686	+				mitochondrial; (mitochondrial)
667129.HMPREF0758_0774		(>)			(ER); (plastid)
667129.HMPREF0758_3684	+				(mitochondrial); (plastid)
667129.HMPREF0758_3871		(>)			ER
667129.HMPREF0758_0428			+		(ER)
667129.HMPREF0758_1826		+			ER
667129.HMPREF0758_0767	+				(mitochondrial)
667129.HMPREF0758_3454		+			(ER); ER
667129.HMPREF0758_2932	+				(mitochondrial); (plastid)
667129.HMPREF0758_5010			+		mitochondrial; (mitochondrial)
667129.HMPREF0758_0434	+				(mitochondrial); plastid
667129.HMPREF0758_1355	+				(mitochondrial); (plastid)
667129.HMPREF0758_1356				(PF00328)	ER
667129.HMPREF0758_1799		(>)			mitochondrial; (mitochondrial)
667129.HMPREF0758_2949			+		ER
667129.HMPREF0758_0842		(>)			(ER)
667129.HMPREF0758_3160		+			ER
667129.HMPREF0758_2304			+		ER
667129.HMPREF0758_2276		(>)			ER
667129.HMPREF0758_0831			+		ER
667129.HMPREF0758_4356		(>)			ER
667129.HMPREF0758_2339			+		ER
667129.HMPREF0758_1430		(<)			(ER)
667129.HMPREF0758_2997				(PF00328)	ER
667129.HMPREF0758_1955			+		ER
667129.HMPREF0758_1081			+		(ER)
667129.HMPREF0758_0861			+		ER
667129.HMPREF0758_2962	+				ER; (ER)
667129.HMPREF0758_1611		(>)			ER
667129.HMPREF0758_3364		+			ER
667129.HMPREF0758_2369			+		(mitochondrial); mitochondrial
667129.HMPREF0758_2368	+				mitochondrial
667129.HMPREF0758_0876			+		ER
667129.HMPREF0758_0114	+		+		(plastid)
667129.HMPREF0758_3617			+		mitochondrial
667129.HMPREF0758_3371			+		ER
667129.HMPREF0758_1028	+				ER
667129.HMPREF0758_0483	+				(mitochondrial)
667129.HMPREF0758_3600		+			ER
667129.HMPREF0758_4744	+				ER
667129.HMPREF0758_2933	+				(mitochondrial)
667129.HMPREF0758_1294		(>)			mitochondrial
667129.HMPREF0758_3321		(>)			ER
667129.HMPREF0758_1445		(>)			(ER); (plastid)
667129.HMPREF0758_2509				(PF16485)	(mitochondrial)
667129.HMPREF0758_1854			+		ER
667129.HMPREF0758_2650		+			ER
667129.HMPREF0758_4753		(>)			ER
667129.HMPREF0758_4010		(>)			ER
667129.HMPREF0758_3260	+				(mitochondrial)
667129.HMPREF0758_2409				(PF07224)	ER
667129.HMPREF0758_4831			+		ER
667129.HMPREF0758_3624		(>)			ER
667129.HMPREF0758_4822			+		ER
667129.HMPREF0758_0374			+		ER
667129.HMPREF0758_4918			+		ER
667129.HMPREF0758_3430	+				(mitochondrial)
667129.HMPREF0758_2095		+			ER
667129.HMPREF0758_4857				(PF02112)	ER
667129.HMPREF0758_0607		(>)			ER
667129.HMPREF0758_0601			+		mitochondrial
667129.HMPREF0758_1867		(>)			ER
667129.HMPREF0758_1699	+				(mitochondrial)
667129.HMPREF0758_2044		+			ER; (ER)
667129.HMPREF0758_2856	(+)				(ER)
667129.HMPREF0758_2273	(+)				(mitochondrial)
667129.HMPREF0758_2271	(+)				ER; (ER)
667129.HMPREF0758_2580	+	(<)
667129.HMPREF0758_1924	+		+
667129.HMPREF0758_4516	(+)				ER
667129.HMPREF0758_0293		(>)			(ER)
667129.HMPREF0758_4299	(+)				mitochondrial; (mitochondrial)
667129.HMPREF0758_0996	+	(>)
667129.HMPREF0758_4086			+		(mitochondrial)
667129.HMPREF0758_4990	+		+		not used
667129.HMPREF0758_0967				(PF00164)	mitochondrial; not used
667129.HMPREF0758_0968				(PF00164)	(mitochondrial); not used
667129.HMPREF0758_1224		(>)			(mitochondrial)
667129.HMPREF0758_2758	+				(mitochondrial)
667129.HMPREF0758_0421	(+)				ER
667129.HMPREF0758_4673	+				(plastid)
667129.HMPREF0758_0241		(>)			(plastid)
667129.HMPREF0758_4412			+		(ER)
667129.HMPREF0758_1549	(+)				ER
667129.HMPREF0758_5068			+		(plastid)
667129.HMPREF0758_0309	(+)				(mitochondrial)
667129.HMPREF0758_2790		(<)			mitochondrial; not used
667129.HMPREF0758_4158		(>)			(ER)
667129.HMPREF0758_0028	(+)				(mitochondrial)
667129.HMPREF0758_4320	(+)				(mitochondrial)
667129.HMPREF0758_3232	+				plastid
667129.HMPREF0758_2781	+				(plastid)
667129.HMPREF0758_2434	(+)				(mitochondrial)
667129.HMPREF0758_1333		(<)	+
667129.HMPREF0758_3229	+	+
667129.HMPREF0758_1887	+				(ER)
667129.HMPREF0758_0914	(+)				(ER); plastid
667129.HMPREF0758_4209		(>)			(mitochondrial)
667129.HMPREF0758_1504		(>)			(ER)
667129.HMPREF0758_1754	(+)				(mitochondrial)
667129.HMPREF0758_1266				(PF04127)	(plastid)
667129.HMPREF0758_0276	(+)				(ER)
667129.HMPREF0758_4965			+		(mitochondrial)
667129.HMPREF0758_4416	+		+
667129.HMPREF0758_4599	(+)				mitochondrial
667129.HMPREF0758_1291	+	(>)
667129.HMPREF0758_1027	(+)				ER
667129.HMPREF0758_3016	+				(plastid)
667129.HMPREF0758_1057		(<)			(ER)
667129.HMPREF0758_1363	+				(plastid)
667129.HMPREF0758_3219	(+)				(mitochondrial)
667129.HMPREF0758_2111	(+)				(ER)
667129.HMPREF0758_1275	+				(plastid)
667129.HMPREF0758_2875	(+)				(mitochondrial)
667129.HMPREF0758_1494		(>)			(plastid)
667129.HMPREF0758_3520	+				(mitochondrial); not used
667129.HMPREF0758_4812	+				(plastid)
667129.HMPREF0758_4536		(>)	+
667129.HMPREF0758_1267			+	(PF04127)
667129.HMPREF0758_4123			+
667129.HMPREF0758_4961		(<)			not used
667129.HMPREF0758_4963		+
667129.HMPREF0758_0356	+
667129.HMPREF0758_1254	+				not used
667129.HMPREF0758_4042		(<)
667129.HMPREF0758_4046	+
667129.HMPREF0758_2858	+				not used
667129.HMPREF0758_4283		(<)
667129.HMPREF0758_3845		(<)
667129.HMPREF0758_3250	+
667129.HMPREF0758_3925	(+)	(>)
667129.HMPREF0758_1743	+
667129.HMPREF0758_1741	+				not used
667129.HMPREF0758_0610	+
667129.HMPREF0758_3076			+
667129.HMPREF0758_0506			+
667129.HMPREF0758_1819			+
667129.HMPREF0758_2354		(<)
667129.HMPREF0758_1664	+
667129.HMPREF0758_2292		(<)
667129.HMPREF0758_3883		+
667129.HMPREF0758_4466	+
667129.HMPREF0758_0341	+
667129.HMPREF0758_4296		(>)
667129.HMPREF0758_0758	(+)				(plastid)
667129.HMPREF0758_4185	+
667129.HMPREF0758_0196	+
667129.HMPREF0758_3400	(+)				(mitochondrial)
667129.HMPREF0758_1752	+
667129.HMPREF0758_3930		(>)
667129.HMPREF0758_3063	+
667129.HMPREF0758_3062	+
667129.HMPREF0758_2620	(+)	+
667129.HMPREF0758_0406	+
667129.HMPREF0758_3067	+
667129.HMPREF0758_4522	+
667129.HMPREF0758_4748			+
667129.HMPREF0758_0991		(>)
667129.HMPREF0758_0971	(+)				(plastid)
667129.HMPREF0758_0308	+
667129.HMPREF0758_2903		(<)
667129.HMPREF0758_3129			+
667129.HMPREF0758_2833			+
667129.HMPREF0758_3276		(<)
667129.HMPREF0758_1691	+
667129.HMPREF0758_3470			+
667129.HMPREF0758_3477				(PF16473)
667129.HMPREF0758_4089		(>)
667129.HMPREF0758_3500	+
667129.HMPREF0758_2053	+				not used
667129.HMPREF0758_2453		(>)
667129.HMPREF0758_0563		(>)
667129.HMPREF0758_0411		+
667129.HMPREF0758_0410	(+)				plastid
667129.HMPREF0758_2126	+
667129.HMPREF0758_4174	(+)				(plastid)
667129.HMPREF0758_2009	+
667129.HMPREF0758_3869		(>)			not used
667129.HMPREF0758_3868	+				not used
667129.HMPREF0758_1597		(>)
667129.HMPREF0758_3994	+
667129.HMPREF0758_1169			+
667129.HMPREF0758_1222				(PF16473)
667129.HMPREF0758_5108			+		not used
667129.HMPREF0758_1078	+
667129.HMPREF0758_2806	+
667129.HMPREF0758_1683	+
667129.HMPREF0758_0178	(+)				(ER); not used
667129.HMPREF0758_4092		(>)
667129.HMPREF0758_0082		+
667129.HMPREF0758_2020		+
667129.HMPREF0758_2486		(>)
667129.HMPREF0758_2334	+
667129.HMPREF0758_0360	+				not used
667129.HMPREF0758_0420			+
667129.HMPREF0758_4955		+
667129.HMPREF0758_2152	+
667129.HMPREF0758_4402				PF13895
667129.HMPREF0758_4675	+
667129.HMPREF0758_5076	+
667129.HMPREF0758_5071	+
667129.HMPREF0758_1220	+
667129.HMPREF0758_3331	(+)				(plastid)
667129.HMPREF0758_3857	+
667129.HMPREF0758_1765	+
667129.HMPREF0758_3094	+
667129.HMPREF0758_3728	(+)				(ER)
667129.HMPREF0758_5101	+				not used
667129.HMPREF0758_0317		(>)
667129.HMPREF0758_4240		(<)
667129.HMPREF0758_0369	+
667129.HMPREF0758_3459	+
667129.HMPREF0758_2031	(+)				(plastid)
667129.HMPREF0758_4931	+
667129.HMPREF0758_2038	(+)				(plastid)
667129.HMPREF0758_4721	(+)				(plastid)
667129.HMPREF0758_2498	+
667129.HMPREF0758_4644		+
667129.HMPREF0758_0651	+
667129.HMPREF0758_0109	+
667129.HMPREF0758_5061			+
667129.HMPREF0758_4799	+
667129.HMPREF0758_4790		(<)
667129.HMPREF0758_2958	+
667129.HMPREF0758_2253		+			not used
667129.HMPREF0758_0230		(>)
667129.HMPREF0758_1700	+
667129.HMPREF0758_0158			+
667129.HMPREF0758_3200	(+)				(plastid)
667129.HMPREF0758_3208	+
667129.HMPREF0758_2007		(>)
667129.HMPREF0758_3150			+
667129.HMPREF0758_3835	(+)		+
667129.HMPREF0758_3942	+
667129.HMPREF0758_0331		(>)
667129.HMPREF0758_2922	+
667129.HMPREF0758_0208	+
667129.HMPREF0758_0209	+
667129.HMPREF0758_0149			+
667129.HMPREF0758_0085			+
667129.HMPREF0758_1414			+
667129.HMPREF0758_1529	+
667129.HMPREF0758_0656	+
667129.HMPREF0758_3161	+
667129.HMPREF0758_3167	+
667129.HMPREF0758_2307			+
667129.HMPREF0758_0929			+
667129.HMPREF0758_0939			+
667129.HMPREF0758_3953	(+)				(plastid)
667129.HMPREF0758_4357	+
667129.HMPREF0758_1312	+
667129.HMPREF0758_3471	(+)				(mitochondrial); not used
667129.HMPREF0758_0216			+
667129.HMPREF0758_2994	+
667129.HMPREF0758_4129	+
667129.HMPREF0758_0689				(PF15588)
667129.HMPREF0758_0682	+				not used
667129.HMPREF0758_3223		+
667129.HMPREF0758_3220	+
667129.HMPREF0758_0046			+
667129.HMPREF0758_0596			+
667129.HMPREF0758_3245	+
667129.HMPREF0758_0660	+
667129.HMPREF0758_0661	(+)				(mitochondrial)
667129.HMPREF0758_2759	+
667129.HMPREF0758_2684		+
667129.HMPREF0758_0918	+
667129.HMPREF0758_4698	+
667129.HMPREF0758_0862	+
667129.HMPREF0758_0865	(+)			(PF01715)
667129.HMPREF0758_0866				(PF01715)
667129.HMPREF0758_0120	+
667129.HMPREF0758_0125			+
667129.HMPREF0758_4110		+
667129.HMPREF0758_0692			+
667129.HMPREF0758_0695	(+)		+
667129.HMPREF0758_0055			+
667129.HMPREF0758_4979			+
667129.HMPREF0758_4973	+
667129.HMPREF0758_3103	+
667129.HMPREF0758_3100	+
667129.HMPREF0758_5066	+
667129.HMPREF0758_2216	+
667129.HMPREF0758_2210	+
667129.HMPREF0758_2182	+
667129.HMPREF0758_3586	+				not used
667129.HMPREF0758_3807	+
667129.HMPREF0758_2365	+
667129.HMPREF0758_3974	+
667129.HMPREF0758_0903	(+)				(mitochondrial)
667129.HMPREF0758_0905		+
667129.HMPREF0758_0118	+
667129.HMPREF0758_0871	+
667129.HMPREF0758_0870	+
667129.HMPREF0758_2560	+
667129.HMPREF0758_1339	+
667129.HMPREF0758_0271	+
667129.HMPREF0758_0274		(<)			not used
667129.HMPREF0758_1396	+
667129.HMPREF0758_0060		(>)
667129.HMPREF0758_0062	(+)			(PF16473)
667129.HMPREF0758_2424	(+)	(<)
667129.HMPREF0758_2352	+
667129.HMPREF0758_2732	+
667129.HMPREF0758_2223	+
667129.HMPREF0758_4749	+
667129.HMPREF0758_4759	+				not used
667129.HMPREF0758_2721	+
667129.HMPREF0758_3955	(+)				(plastid)
667129.HMPREF0758_4726	+
667129.HMPREF0758_2208	(+)				(mitochondrial)
667129.HMPREF0758_1293		(<)
667129.HMPREF0758_4740				(PF01163)
667129.HMPREF0758_4004			+
667129.HMPREF0758_2436	+
667129.HMPREF0758_2500	+
667129.HMPREF0758_0493	+
667129.HMPREF0758_2723		+
667129.HMPREF0758_3008		(>)
667129.HMPREF0758_2659		(>)
667129.HMPREF0758_4395	+
667129.HMPREF0758_4392				(PF01163)
667129.HMPREF0758_4758	+
667129.HMPREF0758_4557			+
667129.HMPREF0758_1079	+
667129.HMPREF0758_0256	(+)				(mitochondrial)
667129.HMPREF0758_2884	+
667129.HMPREF0758_0259	+
667129.HMPREF0758_4959			+
667129.HMPREF0758_4757	+
667129.HMPREF0758_4162	+
667129.HMPREF0758_3014	+
667129.HMPREF0758_2513	+
667129.HMPREF0758_3494	+
667129.HMPREF0758_3281		(<)
667129.HMPREF0758_3754		+
667129.HMPREF0758_4421	+
667129.HMPREF0758_1437			+
667129.HMPREF0758_4905	+
667129.HMPREF0758_1803	+
667129.HMPREF0758_2240	+
667129.HMPREF0758_1843	(+)				(mitochondrial)
667129.HMPREF0758_2661	+
667129.HMPREF0758_1866	+
667129.HMPREF0758_3752		(>)
667129.HMPREF0758_4380		+
667129.HMPREF0758_3320	+
667129.HMPREF0758_2897	+
667129.HMPREF0758_3657	+
667129.HMPREF0758_3213	+
667129.HMPREF0758_0018	(+)				(mitochondrial); not used
667129.HMPREF0758_1096	+
667129.HMPREF0758_4022	+
667129.HMPREF0758_4023		(<)
667129.HMPREF0758_3722	+
667129.HMPREF0758_2565	(+)		+
667129.HMPREF0758_3381	+
667129.HMPREF0758_3435	+
667129.HMPREF0758_1426	+
667129.HMPREF0758_0115	(+)				(mitochondrial)
667129.HMPREF0758_2679	(+)				(mitochondrial)
667129.HMPREF0758_4719	+
667129.HMPREF0758_3145	+
667129.HMPREF0758_4446	+
667129.HMPREF0758_2842	+
667129.HMPREF0758_1485	+
667129.HMPREF0758_0855	+
667129.HMPREF0758_3894	+
667129.HMPREF0758_1739	+				not used
667129.HMPREF0758_2977		+
667129.HMPREF0758_3298	(+)				mitochondrial; not used
667129.HMPREF0758_4703	+
667129.HMPREF0758_4704	+
667129.HMPREF0758_1693	+
667129.HMPREF0758_0805		(<)
667129.HMPREF0758_1751		(>)
667129.HMPREF0758_1750			+
667129.HMPREF0758_1131		(<)
667129.HMPREF0758_3572	(+)
667129.HMPREF0758_4285	(+)
667129.HMPREF0758_3252	(+)
667129.HMPREF0758_4997	(+)
667129.HMPREF0758_0618	(+)
667129.HMPREF0758_2071	(+)
667129.HMPREF0758_3678	(+)
667129.HMPREF0758_2612	(+)
667129.HMPREF0758_1929	(+)
667129.HMPREF0758_1926	(+)				not used
667129.HMPREF0758_1665	(+)
667129.HMPREF0758_4515	(+)
667129.HMPREF0758_1144	(+)
667129.HMPREF0758_2917	(+)
667129.HMPREF0758_4054	(+)
667129.HMPREF0758_2739	(+)
667129.HMPREF0758_1409	(+)
667129.HMPREF0758_0756	(+)
667129.HMPREF0758_0754	(+)
667129.HMPREF0758_3718	(+)
667129.HMPREF0758_0572	(+)
667129.HMPREF0758_0408	(+)
667129.HMPREF0758_4617	(+)
667129.HMPREF0758_4615	(+)
667129.HMPREF0758_4506	(+)
667129.HMPREF0758_4505	(+)
667129.HMPREF0758_0972	(+)
667129.HMPREF0758_1236	(+)
667129.HMPREF0758_0372	(+)
667129.HMPREF0758_1580	+
667129.HMPREF0758_2830	(+)
667129.HMPREF0758_4266	(+)
667129.HMPREF0758_1373	(+)
667129.HMPREF0758_3376	(+)
667129.HMPREF0758_4081	(+)
667129.HMPREF0758_1837	(+)
667129.HMPREF0758_4668	(+)
667129.HMPREF0758_2477	(+)
667129.HMPREF0758_3176	(+)				not used
667129.HMPREF0758_5102	(+)				not used
667129.HMPREF0758_1163	(+)
667129.HMPREF0758_1225	(+)
667129.HMPREF0758_4360	(+)
667129.HMPREF0758_3462	(+)
667129.HMPREF0758_0081	(+)				not used
667129.HMPREF0758_4099	(+)
667129.HMPREF0758_0554	(+)
667129.HMPREF0758_0559	(+)
667129.HMPREF0758_1871	(+)
667129.HMPREF0758_1464	(+)
667129.HMPREF0758_4733	(+)
667129.HMPREF0758_2158	(+)
667129.HMPREF0758_1959	(+)
667129.HMPREF0758_1917	(+)
667129.HMPREF0758_5077	(+)
667129.HMPREF0758_3851	(+)				not used
667129.HMPREF0758_3332	(+)
667129.HMPREF0758_0955	(+)
667129.HMPREF0758_4608	(+)				not used
667129.HMPREF0758_4540	(+)
667129.HMPREF0758_2201	(+)
667129.HMPREF0758_4148	(+)
667129.HMPREF0758_0701	(+)
667129.HMPREF0758_2813	(+)
667129.HMPREF0758_2319	(+)
667129.HMPREF0758_0160	(+)
667129.HMPREF0758_3456	(+)
667129.HMPREF0758_0361	(+)
667129.HMPREF0758_1789	(+)
667129.HMPREF0758_1782	(+)
667129.HMPREF0758_3096	(+)
667129.HMPREF0758_4928	(+)
667129.HMPREF0758_1030	(+)
667129.HMPREF0758_5060	(+)
667129.HMPREF0758_0564	(+)
667129.HMPREF0758_4794	(+)
667129.HMPREF0758_4420	(+)
667129.HMPREF0758_0899	(+)
667129.HMPREF0758_1358	(+)
667129.HMPREF0758_2950	(+)				not used
667129.HMPREF0758_2957	(+)
667129.HMPREF0758_1206	(+)
667129.HMPREF0758_1351	(+)
667129.HMPREF0758_4337	(+)
667129.HMPREF0758_0305	(+)
667129.HMPREF0758_1370	(+)
667129.HMPREF0758_3882	(+)
667129.HMPREF0758_1189	(+)
667129.HMPREF0758_1688	(+)
667129.HMPREF0758_4147	(+)
667129.HMPREF0758_2795	(+)
667129.HMPREF0758_3440	(+)				not used
667129.HMPREF0758_3204	(+)
667129.HMPREF0758_2310	(+)
667129.HMPREF0758_0446	(+)
667129.HMPREF0758_1973	(+)
667129.HMPREF0758_5091	(+)
667129.HMPREF0758_1150	(+)
667129.HMPREF0758_0937	(+)
667129.HMPREF0758_2940	(+)
667129.HMPREF0758_1849	(+)
667129.HMPREF0758_1328	(+)
667129.HMPREF0758_1564	(+)
667129.HMPREF0758_0844	(+)
667129.HMPREF0758_0202	(+)
667129.HMPREF0758_3933	(+)				not used
667129.HMPREF0758_1412	(+)
667129.HMPREF0758_3545	(+)
667129.HMPREF0758_2014	(+)
667129.HMPREF0758_3168	(+)
667129.HMPREF0758_2787	(+)
667129.HMPREF0758_2161	(+)
667129.HMPREF0758_2432	(+)
667129.HMPREF0758_3197	(+)
667129.HMPREF0758_4090	(+)
667129.HMPREF0758_0833	(+)
667129.HMPREF0758_1310	(+)
667129.HMPREF0758_3651	(+)
667129.HMPREF0758_0219	(+)
667129.HMPREF0758_0136	(+)
667129.HMPREF0758_0683	(+)
667129.HMPREF0758_3228	(+)
667129.HMPREF0758_3222	(+)
667129.HMPREF0758_3550	(+)
667129.HMPREF0758_3555	(+)				not used
667129.HMPREF0758_4901	(+)
667129.HMPREF0758_3316	(+)
667129.HMPREF0758_3178	(+)
667129.HMPREF0758_3177	(+)				not used
667129.HMPREF0758_2376	(+)
667129.HMPREF0758_2688	(+)
667129.HMPREF0758_3813	(+)
667129.HMPREF0758_1080	+
667129.HMPREF0758_3960	(+)
667129.HMPREF0758_2967	(+)
667129.HMPREF0758_4347	(+)
667129.HMPREF0758_0121	(+)
667129.HMPREF0758_4220	(+)
667129.HMPREF0758_1918	(+)
667129.HMPREF0758_3698	(+)
667129.HMPREF0758_0693	(+)				not used
667129.HMPREF0758_3699	(+)
667129.HMPREF0758_0587	(+)
667129.HMPREF0758_3764	(+)
667129.HMPREF0758_1651	(+)
667129.HMPREF0758_3102	(+)
667129.HMPREF0758_0677	(+)
667129.HMPREF0758_0673	(+)
667129.HMPREF0758_0476	(+)
667129.HMPREF0758_3612	(+)
667129.HMPREF0758_2188	(+)
667129.HMPREF0758_2181	(+)
667129.HMPREF0758_4224	(+)
667129.HMPREF0758_1989	(+)
667129.HMPREF0758_3979	(+)
667129.HMPREF0758_1187	(+)				not used
667129.HMPREF0758_3188	(+)
667129.HMPREF0758_1158	(+)
667129.HMPREF0758_4213	(+)
667129.HMPREF0758_1332	(+)
667129.HMPREF0758_0119	(+)
667129.HMPREF0758_2092	(+)
667129.HMPREF0758_3209	(+)
667129.HMPREF0758_2215	(+)
667129.HMPREF0758_0067	(+)
667129.HMPREF0758_1416	(+)
667129.HMPREF0758_1828	(+)
667129.HMPREF0758_1415	(+)
667129.HMPREF0758_1606	(+)
667129.HMPREF0758_4728	(+)				not used
667129.HMPREF0758_3170	(+)
667129.HMPREF0758_4815	(+)
667129.HMPREF0758_4816	(+)
667129.HMPREF0758_2426	(+)				not used
667129.HMPREF0758_4727	(+)
667129.HMPREF0758_3601	(+)
667129.HMPREF0758_3602	(+)
667129.HMPREF0758_0401	(+)
667129.HMPREF0758_4586	(+)
667129.HMPREF0758_1212	(+)
667129.HMPREF0758_1198	(+)
667129.HMPREF0758_0804	(+)
667129.HMPREF0758_4568	(+)
667129.HMPREF0758_2430	(+)
667129.HMPREF0758_0107	(+)				not used
667129.HMPREF0758_3422	(+)
667129.HMPREF0758_3740	(+)
667129.HMPREF0758_3341	(+)
667129.HMPREF0758_2507	(+)
667129.HMPREF0758_4971	(+)
667129.HMPREF0758_2349	(+)
667129.HMPREF0758_3638	(+)
667129.HMPREF0758_4438	(+)
667129.HMPREF0758_3126	(+)				not used
667129.HMPREF0758_3163	(+)
667129.HMPREF0758_0258	(+)
667129.HMPREF0758_2882	(+)
667129.HMPREF0758_2542	(+)
667129.HMPREF0758_1704	(+)
667129.HMPREF0758_4168	(+)
667129.HMPREF0758_2865	(+)
667129.HMPREF0758_4018	(+)
667129.HMPREF0758_4016	(+)
667129.HMPREF0758_4011	(+)				not used
667129.HMPREF0758_3289	(+)
667129.HMPREF0758_0337	(+)
667129.HMPREF0758_0719	(+)
667129.HMPREF0758_4422	(+)
667129.HMPREF0758_2089	(+)
667129.HMPREF0758_0538	(+)
667129.HMPREF0758_2399	(+)
667129.HMPREF0758_3928	(+)
667129.HMPREF0758_3922	(+)
667129.HMPREF0758_2557	(+)
667129.HMPREF0758_3019	(+)
667129.HMPREF0758_4385	(+)
667129.HMPREF0758_1068	(+)
667129.HMPREF0758_1060	(+)
667129.HMPREF0758_0014	(+)
667129.HMPREF0758_5008	(+)
667129.HMPREF0758_3723	(+)
667129.HMPREF0758_1493	(+)
667129.HMPREF0758_1490	(+)
667129.HMPREF0758_0707	(+)
667129.HMPREF0758_3525	(+)
667129.HMPREF0758_4843	(+)
667129.HMPREF0758_4840	(+)
667129.HMPREF0758_0632	(+)
667129.HMPREF0758_0528	(+)
667129.HMPREF0758_2674	(+)
667129.HMPREF0758_4712	(+)
667129.HMPREF0758_4946	(+)				not used
667129.HMPREF0758_1379	(+)
667129.HMPREF0758_2388	(+)
667129.HMPREF0758_3939	(+)
667129.HMPREF0758_1643	(+)
667129.HMPREF0758_0924	(+)
667129.HMPREF0758_5003	(+)
667129.HMPREF0758_0510	(+)
667129.HMPREF0758_1121	(+)
667129.HMPREF0758_1468	(+)
667129.HMPREF0758_2322	(+)
667129.HMPREF0758_1261	(+)
667129.HMPREF0758_0481	(+)
667129.HMPREF0758_3897	(+)
667129.HMPREF0758_1284	(+)
667129.HMPREF0758_3734	(+)
667129.HMPREF0758_3736	(+)
667129.HMPREF0758_1737	(+)
667129.HMPREF0758_1736	(+)
667129.HMPREF0758_3649	(+)
667129.HMPREF0758_4708	(+)
667129.HMPREF0758_2667	(+)
667129.HMPREF0758_1345	(+)
667129.HMPREF0758_3619	(+)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveT3 predictions using new standard model 2.0.1 (PROTEINS.NEW.EFFECTIVET3)
• EffectiveT3 predictions using old standard model 1.0.1 (PROTEINS.OLD.EFFECTIVET3)
• EffectiveCCBD predictions (PROTEINS.CHAPERONES.TXT)
• T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
• T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: YES (FDR = 12.5 %)
  Estimated copy number = 0.3 (3/10 KEGG proteins)
• Functional Type IV secretion system: YES (FDR = 7.2 %)
  Estimated copy number = 0.2 (2/10 KEGG proteins)
• Functional Type VI secretion system: YES (FDR = 7.7 %)
  Estimated copy number = 1.375 (11/8 KEGG proteins)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================