Metamenu

Effective results for Pasteurella dagmatis ATCC 43325 (eggnog40)

Summary

Number of putative secreted proteins: 13
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 7 eukaryotic-like domains, contained in 13 proteins (0 high, 13 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
667128.HMPREF0621_0851(PF03222)ER; (ER)
667128.HMPREF0621_0088(PF03222)(mitochondrial)
667128.HMPREF0621_1235(PF03222)ER
667128.HMPREF0621_1254(PF02026)(mitochondrial)
667128.HMPREF0621_0448(PF03222)ER; (ER)
667128.HMPREF0621_0807(PF03222)(ER)
667128.HMPREF0621_1077(PF10063)
667128.HMPREF0621_1891(PF13910)
667128.HMPREF0621_0130(PF01755)
667128.HMPREF0621_0132(PF01755)
667128.HMPREF0621_0338(PF10571)
667128.HMPREF0621_1468(PF01755)
667128.HMPREF0621_1864(PF04664)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================