Effective results for Legionella drancourtii LLAP12 (eggnog40)
Summary
Number of putative secreted proteins: 289
- Predicted by T4SEpre: 277
- Predicted by EffectiveELD: 43 eukaryotic-like domains, contained in 99 proteins (29 high, 70 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
| Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
|---|---|---|---|---|---|
| 658187.LDG_9064 | + | PF07517 | (mitochondrial) | ||
| 658187.LDG_8849 | + | (PF00314) | ER | ||
| 658187.LDG_7957 | + | (PF12796) PF00646 PF13606 | |||
| 658187.LDG_5869 | + | ER | |||
| 658187.LDG_7292 | + | ER | |||
| 658187.LDG_8689 | (PF00657) | ER | |||
| 658187.LDG_5058 | (PF00657) | (mitochondrial) | |||
| 658187.LDG_6350 | + | ER; (ER) | |||
| 658187.LDG_7032 | + | (ER) | |||
| 658187.LDG_7321 | (PF00657) | ER | |||
| 658187.LDG_8956 | + | ER | |||
| 658187.LDG_5335 | PF01222 | ER | |||
| 658187.LDG_7658 | PF01150 | ER | |||
| 658187.LDG_5224 | + | mitochondrial; (mitochondrial) | |||
| 658187.LDG_5600 | + | (mitochondrial) | |||
| 658187.LDG_7475 | + | (ER) | |||
| 658187.LDG_8471 | + | ER | |||
| 658187.LDG_8203 | + | ER | |||
| 658187.LDG_5376 | + | ER | |||
| 658187.LDG_8207 | + | ER | |||
| 658187.LDG_7116 | + | (ER) | |||
| 658187.LDG_5247 | (PF01764) | (mitochondrial) | |||
| 658187.LDG_9031 | + | (mitochondrial) | |||
| 658187.LDG_5540 | + | ER | |||
| 658187.LDG_7410 | + | ER | |||
| 658187.LDG_5381 | PF00617 | mitochondrial; (mitochondrial) | |||
| 658187.LDG_5549 | + | ER | |||
| 658187.LDG_5941 | PF08123 | ER | |||
| 658187.LDG_6628 | + | (mitochondrial) | |||
| 658187.LDG_6626 | (PF00657) | ER | |||
| 658187.LDG_7714 | + | (mitochondrial); mitochondrial | |||
| 658187.LDG_5440 | PF08123 | ER | |||
| 658187.LDG_7564 | (PF09363) (PF09364) (PF03894) | ||||
| 658187.LDG_5637 | + | (ER); plastid | |||
| 658187.LDG_6178 | (PF13637) | ER | |||
| 658187.LDG_6176 | + | ER; (ER) | |||
| 658187.LDG_8966 | + | ER; (ER) | |||
| 658187.LDG_5046 | (PF09363) (PF09364) (PF03894) | ||||
| 658187.LDG_5513 | + | (mitochondrial) | |||
| 658187.LDG_6342 | + | PF12340 | |||
| 658187.LDG_6988 | + | (ER) | |||
| 658187.LDG_6181 | + | (ER) | |||
| 658187.LDG_6407 | + | (PF12796) | |||
| 658187.LDG_8763 | + | (mitochondrial) | |||
| 658187.LDG_7312 | + | PF07517 | |||
| 658187.LDG_7267 | (PF00119) | (mitochondrial) | |||
| 658187.LDG_6655 | + | (plastid) | |||
| 658187.LDG_8083 | + | (PF12796) | |||
| 658187.LDG_7874 | + | (PF12796) | |||
| 658187.LDG_7276 | (PF09363) (PF03894) | ||||
| 658187.LDG_7275 | (PF09364) (PF03894) | ||||
| 658187.LDG_6535 | + | (mitochondrial) | |||
| 658187.LDG_5927 | + | PF07517 | |||
| 658187.LDG_5230 | + | PF00621 | |||
| 658187.LDG_7185 | PF13606 | (ER) | |||
| 658187.LDG_7522 | + | PF05677 | |||
| 658187.LDG_5815 | (PF00119) | (ER) | |||
| 658187.LDG_5767 | + | (ER) | |||
| 658187.LDG_5387 | + | (PF13637) | |||
| 658187.LDG_6164 | + | (ER) | |||
| 658187.LDG_7707 | + | (PF12796) | |||
| 658187.LDG_6422 | (PF13637) (PF12796) | ||||
| 658187.LDG_6394 | + | PF00617 | |||
| 658187.LDG_5735 | + | PF08613 | |||
| 658187.LDG_5515 | (PF00119) | (mitochondrial) | |||
| 658187.LDG_8946 | + | plastid | |||
| 658187.LDG_5993 | + | ||||
| 658187.LDG_6965 | + | ||||
| 658187.LDG_6416 | (PF00023) | ||||
| 658187.LDG_6412 | + | ||||
| 658187.LDG_6419 | (PF00023) | ||||
| 658187.LDG_6418 | + | ||||
| 658187.LDG_6184 | + | ||||
| 658187.LDG_7164 | + | ||||
| 658187.LDG_7298 | PF03133 | ||||
| 658187.LDG_8024 | + | ||||
| 658187.LDG_7765 | PF07517 | ||||
| 658187.LDG_5726 | PF00646 | ||||
| 658187.LDG_7580 | + | ||||
| 658187.LDG_7588 | + | ||||
| 658187.LDG_7835 | + | ||||
| 658187.LDG_7836 | (PF02933) | ||||
| 658187.LDG_8680 | + | ||||
| 658187.LDG_8759 | + | ||||
| 658187.LDG_7371 | + | ||||
| 658187.LDG_8977 | + | ||||
| 658187.LDG_6970 | (PF02823) | ||||
| 658187.LDG_5477 | + | ||||
| 658187.LDG_5473 | + | ||||
| 658187.LDG_5984 | + | ||||
| 658187.LDG_7114 | (PF06250) | ||||
| 658187.LDG_5662 | + | ||||
| 658187.LDG_8765 | + | ||||
| 658187.LDG_7246 | + | ||||
| 658187.LDG_5043 | + | ||||
| 658187.LDG_8949 | + | ||||
| 658187.LDG_8419 | + | ||||
| 658187.LDG_5068 | + | ||||
| 658187.LDG_7911 | + | ||||
| 658187.LDG_5882 | (PF01795) | ||||
| 658187.LDG_5881 | (PF01795) | ||||
| 658187.LDG_6691 | (PF14311) | ||||
| 658187.LDG_6694 | + | ||||
| 658187.LDG_6324 | + | ||||
| 658187.LDG_7736 | + | ||||
| 658187.LDG_6214 | + | ||||
| 658187.LDG_6948 | + | ||||
| 658187.LDG_7109 | + | ||||
| 658187.LDG_8252 | + | ||||
| 658187.LDG_6827 | + | ||||
| 658187.LDG_7951 | PF00617 | ||||
| 658187.LDG_7632 | + | ||||
| 658187.LDG_5673 | + | ||||
| 658187.LDG_8957 | (PF01764) | ||||
| 658187.LDG_5071 | (PF01764) | ||||
| 658187.LDG_5271 | (PF00657) | ||||
| 658187.LDG_5842 | + | ||||
| 658187.LDG_5304 | + | ||||
| 658187.LDG_7311 | + | ||||
| 658187.LDG_6209 | + | ||||
| 658187.LDG_6029 | + | ||||
| 658187.LDG_7000 | + | ||||
| 658187.LDG_7009 | PF12340 | ||||
| 658187.LDG_8145 | + | ||||
| 658187.LDG_7648 | (PF01764) | ||||
| 658187.LDG_7319 | (PF02873) | ||||
| 658187.LDG_7313 | (PF12796) | ||||
| 658187.LDG_7485 | + | ||||
| 658187.LDG_7867 | + | ||||
| 658187.LDG_7269 | (PF00213) | ||||
| 658187.LDG_7265 | (PF02823) | ||||
| 658187.LDG_9044 | + | ||||
| 658187.LDG_8437 | (PF13661) | ||||
| 658187.LDG_6782 | PF13606 | ||||
| 658187.LDG_6233 | + | ||||
| 658187.LDG_6234 | + | ||||
| 658187.LDG_6011 | + | ||||
| 658187.LDG_6014 | + | ||||
| 658187.LDG_7344 | (PF00071) | ||||
| 658187.LDG_7010 | + | ||||
| 658187.LDG_7305 | + | ||||
| 658187.LDG_7490 | (PF06250) | ||||
| 658187.LDG_5654 | + | ||||
| 658187.LDG_7273 | (PF07831) | ||||
| 658187.LDG_5254 | + | ||||
| 658187.LDG_5787 | + | ||||
| 658187.LDG_8337 | (PF06250) | ||||
| 658187.LDG_5757 | PF00644 | ||||
| 658187.LDG_5754 | + | ||||
| 658187.LDG_5751 | + | ||||
| 658187.LDG_5437 | + | ||||
| 658187.LDG_5320 | + | ||||
| 658187.LDG_5925 | + | ||||
| 658187.LDG_6006 | + | ||||
| 658187.LDG_8001 | + | ||||
| 658187.LDG_6316 | + | ||||
| 658187.LDG_5015 | + | ||||
| 658187.LDG_8520 | (PF02873) | ||||
| 658187.LDG_5225 | (PF06250) | ||||
| 658187.LDG_8858 | + | ||||
| 658187.LDG_5132 | + | ||||
| 658187.LDG_5152 | + | ||||
| 658187.LDG_5926 | + | ||||
| 658187.LDG_5912 | + | ||||
| 658187.LDG_6493 | + | ||||
| 658187.LDG_5709 | + | ||||
| 658187.LDG_7933 | + | ||||
| 658187.LDG_6674 | (PF12796) | ||||
| 658187.LDG_6676 | + | ||||
| 658187.LDG_6105 | (PF05761) | ||||
| 658187.LDG_8448 | PF10520 | ||||
| 658187.LDG_6906 | + | ||||
| 658187.LDG_6904 | + | ||||
| 658187.LDG_5905 | + | ||||
| 658187.LDG_6246 | + | ||||
| 658187.LDG_6065 | + | ||||
| 658187.LDG_6667 | + | ||||
| 658187.LDG_7044 | + | ||||
| 658187.LDG_7046 | + | ||||
| 658187.LDG_7680 | + | ||||
| 658187.LDG_8250 | + | ||||
| 658187.LDG_8294 | + | ||||
| 658187.LDG_8293 | + | ||||
| 658187.LDG_8292 | + | ||||
| 658187.LDG_8501 | + | ||||
| 658187.LDG_8509 | + | ||||
| 658187.LDG_8058 | + | ||||
| 658187.LDG_5594 | + | ||||
| 658187.LDG_9016 | + | ||||
| 658187.LDG_9019 | + | ||||
| 658187.LDG_7649 | + | ||||
| 658187.LDG_5809 | + | ||||
| 658187.LDG_5804 | (PF11074) | ||||
| 658187.LDG_6613 | + | ||||
| 658187.LDG_7187 | + | ||||
| 658187.LDG_7233 | (PF13427) | ||||
| 658187.LDG_8392 | + | ||||
| 658187.LDG_8269 | + | ||||
| 658187.LDG_7523 | + | ||||
| 658187.LDG_8462 | + | ||||
| 658187.LDG_6868 | + | ||||
| 658187.LDG_6861 | (PF12796) | ||||
| 658187.LDG_6592 | PF07517 | ||||
| 658187.LDG_6263 | + | ||||
| 658187.LDG_6911 | + | ||||
| 658187.LDG_6912 | + | ||||
| 658187.LDG_6460 | + | ||||
| 658187.LDG_6250 | + | ||||
| 658187.LDG_5817 | (PF00213) | ||||
| 658187.LDG_5813 | (PF02823) | ||||
| 658187.LDG_6600 | + | ||||
| 658187.LDG_6070 | + | ||||
| 658187.LDG_8071 | + | ||||
| 658187.LDG_8079 | + | ||||
| 658187.LDG_8078 | + | ||||
| 658187.LDG_7953 | + | ||||
| 658187.LDG_5778 | + | ||||
| 658187.LDG_8672 | + | ||||
| 658187.LDG_8023 | + | ||||
| 658187.LDG_6859 | + | ||||
| 658187.LDG_5558 | (PF00023) | ||||
| 658187.LDG_9038 | + | ||||
| 658187.LDG_9039 | (PF12796) | ||||
| 658187.LDG_5001 | PF05677 | ||||
| 658187.LDG_9032 | (PF00071) | ||||
| 658187.LDG_6142 | + | ||||
| 658187.LDG_6146 | (PF06250) | ||||
| 658187.LDG_8069 | (PF09265) | ||||
| 658187.LDG_7727 | (PF12796) | ||||
| 658187.LDG_5768 | + | ||||
| 658187.LDG_5766 | (PF00094) | ||||
| 658187.LDG_5765 | + | ||||
| 658187.LDG_7543 | + | ||||
| 658187.LDG_5380 | (PF12796) | ||||
| 658187.LDG_5389 | + | ||||
| 658187.LDG_6934 | (PF13637) | ||||
| 658187.LDG_6930 | + | ||||
| 658187.LDG_6446 | + | ||||
| 658187.LDG_6444 | (PF00342) | ||||
| 658187.LDG_6442 | (PF00342) | ||||
| 658187.LDG_6443 | (PF00342) | ||||
| 658187.LDG_5836 | + | ||||
| 658187.LDG_8944 | + | ||||
| 658187.LDG_8640 | + | ||||
| 658187.LDG_8942 | + | ||||
| 658187.LDG_6713 | + | ||||
| 658187.LDG_7396 | + | ||||
| 658187.LDG_7403 | (PF07958) | ||||
| 658187.LDG_7402 | (PF12471) | ||||
| 658187.LDG_5069 | + | ||||
| 658187.LDG_8019 | + | ||||
| 658187.LDG_7713 | + | ||||
| 658187.LDG_7717 | + | ||||
| 658187.LDG_8126 | PF07517 | ||||
| 658187.LDG_8836 | + | ||||
| 658187.LDG_5622 | + | ||||
| 658187.LDG_7983 | + | ||||
| 658187.LDG_5533 | + | ||||
| 658187.LDG_6946 | + | ||||
| 658187.LDG_6432 | + | ||||
| 658187.LDG_6657 | + | ||||
| 658187.LDG_7094 | + | ||||
| 658187.LDG_7093 | + | ||||
| 658187.LDG_8092 | + | ||||
| 658187.LDG_7709 | + | ||||
| 658187.LDG_7562 | (PF07831) | ||||
| 658187.LDG_8137 | + | ||||
| 658187.LDG_8131 | PF00646 | ||||
| 658187.LDG_8693 | + | ||||
| 658187.LDG_5037 | (PF12796) | ||||
| 658187.LDG_5527 | (PF13427) | ||||
| 658187.LDG_6421 | PF00153 | ||||
| 658187.LDG_5851 | (PF12796) | ||||
| 658187.LDG_5855 | + | ||||
| 658187.LDG_6773 | + | ||||
| 658187.LDG_8669 | + | ||||
| 658187.LDG_7171 | + | ||||
| 658187.LDG_7785 | + | ||||
| 658187.LDG_7771 | PF07517 | ||||
| 658187.LDG_8581 | + | ||||
| 658187.LDG_5736 | + | ||||
| 658187.LDG_5045 | + | ||||
| 658187.LDG_5512 | + | ||||
| 658187.LDG_5605 | + | ||||
| 658187.LDG_8216 | + | ||||
| 658187.LDG_8968 | (PF07831) | ||||
| 658187.LDG_5518 | (PF00213) | ||||
| 658187.LDG_5044 | + | ||||
| 658187.LDG_7302 | + |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
- T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: YES (FDR = 0.5 %)
- Functional Type III secretion system: NO (FDR = 12.5 %)
- Functional Type IV secretion system: YES (FDR = 7.2 %)
Estimated copy number = 1.2 (12/10 KEGG proteins)
- Functional Type VI secretion system: NO (FDR = 7.7 %)
Individual results for each secretion system
- List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
- List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
- List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
- List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)
Parameters:
==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================
Estimated copy number = 1.2 (12/10 KEGG proteins)
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- +43 1 4277 876681
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