Effective results for Candidatus Liberibacter solanacearum CLso-ZC1 (eggnog40)

Summary

Number of putative secreted proteins: 69
- Predicted by T4SEpre: 74
- Predicted by EffectiveELD: 5 eukaryotic-like domains, contained in 15 proteins (2 high, 13 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
658172.CKC_05975			+	(PF00625)	(mitochondrial); (plastid)
658172.CKC_01105			+	(PF00625)	(mitochondrial); (plastid)
658172.CKC_03555			+		ER
658172.CKC_00800			+		ER; (mitochondrial)
658172.CKC_03880			+		ER
658172.CKC_04510			+		ER
658172.CKC_02895			+		(ER)
658172.CKC_04080			+		ER
658172.CKC_03000			+		ER
658172.CKC_00825			+		ER
658172.CKC_03835			+		ER
658172.CKC_04375			+		ER
658172.CKC_03750				(PF00959)	(mitochondrial)
658172.CKC_04420			+		ER
658172.CKC_00035			+		(ER)
658172.CKC_02425			+		ER
658172.CKC_00565			+		(ER)
658172.CKC_01025			+	(PF08707)
658172.CKC_03630			+		(ER)
658172.CKC_01520			+
658172.CKC_05950			+
658172.CKC_04770			+
658172.CKC_02850			+
658172.CKC_04140			+
658172.CKC_00550			+
658172.CKC_00630			+
658172.CKC_03690			+
658172.CKC_02335			+
658172.CKC_04085				(PF00959)
658172.CKC_03130			+
658172.CKC_03640			+
658172.CKC_05895				(PF08707)
658172.CKC_05890			+
658172.CKC_05390				PF00177
658172.CKC_01800			+
658172.CKC_00585			+
658172.CKC_04195			+
658172.CKC_01135			+
658172.CKC_04115			+
658172.CKC_03585			+
658172.CKC_05370			+
658172.CKC_02900				(PF00959)
658172.CKC_02990				(PF00959)
658172.CKC_02610			+
658172.CKC_00305			+
658172.CKC_04475			+
658172.CKC_01715			+
658172.CKC_05705			+
658172.CKC_04650				(PF00959)
658172.CKC_03455			+
658172.CKC_05835			+
658172.CKC_05385				PF00177
658172.CKC_05830			+
658172.CKC_04555				(PF00625)
658172.CKC_00860				(PF00959)
658172.CKC_01215			+
658172.CKC_04990			+
658172.CKC_01740			+
658172.CKC_05110				(PF00959)
658172.CKC_01515			+
658172.CKC_01315			+
658172.CKC_04265				(PF01442)
658172.CKC_01140			+
658172.CKC_03295			+
658172.CKC_05025			+
658172.CKC_01680			+
658172.CKC_04440			+
658172.CKC_04725			+
658172.CKC_01950			+

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
• T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: YES (FDR = 7.2 %)
  Estimated copy number = 0.0 (0/10 KEGG proteins)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================