Metamenu

Effective results for Erysipelothrix rhusiopathiae str. Fujisawa (eggnog40)

Summary

Number of putative secreted proteins: 23
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 9 eukaryotic-like domains, contained in 23 proteins (14 high, 9 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
650150.ERH_0765(PF02278) (PF08124) (PF02884)ER
650150.ERH_0150(PF02278) (PF08124) (PF02884)ER; (ER)
650150.ERH_1210(PF02278) (PF08124) (PF02884)ER
650150.ERH_0561(PF03644)ER; (ER)
650150.ERH_1212(PF11070)ER
650150.ERH_1292PF02407 PF00910
650150.ERH_1414PF13936
650150.ERH_0919PF13936
650150.ERH_0171PF13936
650150.ERH_0789PF13936
650150.ERH_0544(PF01633)
650150.ERH_1549PF13936
650150.ERH_0422PF13936
650150.ERH_0378PF13936
650150.ERH_0897PF13936
650150.ERH_0637PF13936
650150.ERH_1487(PF01633)
650150.ERH_1076PF13936
650150.ERH_0841PF13936
650150.ERH_0865(PF01633)
650150.ERH_0862(PF01633)
650150.ERH_0461PF13936
650150.ERH_0251PF13936

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================