Effective results for Gordonia neofelifaecis NRRL B-59395 (eggnog40)

Summary

Number of putative secreted proteins: 26
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 15 eukaryotic-like domains, contained in 26 proteins (5 high, 21 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
644548.SCNU_05381				(PF03959)	ER; (ER)
644548.SCNU_04756				(PF00743)	(mitochondrial)
644548.SCNU_08473				(PF17048)	(mitochondrial)
644548.SCNU_12993				PF05007	mitochondrial
644548.SCNU_01830				PF13886	ER
644548.SCNU_20152				(PF08354) PF16073
644548.SCNU_11650				(PF14232) (PF14231)
644548.SCNU_05596				(PF00743)	plastid
644548.SCNU_18127				(PF14232) (PF14231)
644548.SCNU_08951				PF08213	not used
644548.SCNU_03562				(PF00743)
644548.SCNU_18307				(PF08768)
644548.SCNU_18207				(PF03405)
644548.SCNU_14736				(PF08768)
644548.SCNU_18187				(PF03405)
644548.SCNU_08318				(PF03405)
644548.SCNU_04971				(PF00454)
644548.SCNU_01915				(PF05277)
644548.SCNU_16723				(PF00743)
644548.SCNU_11655				(PF00743)
644548.SCNU_02802				(PF03405)
644548.SCNU_16443				(PF00743)
644548.SCNU_00980				PF07460
644548.SCNU_03882				(PF00743)
644548.SCNU_00285				(PF08768)
644548.SCNU_03947				(PF00743)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================