Metamenu

Effective results for Syntrophothermus lipocalidus DSM 12680 (eggnog40)

Summary

Number of putative secreted proteins: 20
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 10 eukaryotic-like domains, contained in 20 proteins (4 high, 16 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
643648.Slip_0327(PF00791)ER
643648.Slip_2147PF10342ER
643648.Slip_2196(PF01184)(ER)
643648.Slip_1368(PF00643)ER
643648.Slip_0582(PF01184)(ER)
643648.Slip_0500(PF02550)
643648.Slip_0125(PF02256)
643648.Slip_0462(PF02550)
643648.Slip_0665(PF02550)
643648.Slip_1533(PF02256)
643648.Slip_0512PF16760
643648.Slip_0513PF16760
643648.Slip_1457(PF01008)
643648.Slip_1118PF00493
643648.Slip_0714(PF01008)
643648.Slip_1283(PF01008)
643648.Slip_0882(PF02550)
643648.Slip_0394(PF09419)
643648.Slip_0543(PF02256)
643648.Slip_1712(PF01184)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================