Metamenu

Effective results for Starkeya novella DSM 506 (eggnog40)

Summary

Number of putative secreted proteins: 102
- Predicted by T4SEpre: 62
- Predicted by EffectiveELD: 15 eukaryotic-like domains, contained in 48 proteins (0 high, 48 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
639283.Snov_2253+ER; (ER)
639283.Snov_2624+mitochondrial; (mitochondrial)
639283.Snov_0061(PF13441)ER
639283.Snov_4338(PF01970)ER; (ER)
639283.Snov_4209+ER
639283.Snov_2789+ER
639283.Snov_0311+ER
639283.Snov_3085+ER
639283.Snov_2947+ER
639283.Snov_2117+(ER)
639283.Snov_3126+ER
639283.Snov_1904+ER
639283.Snov_2326+(mitochondrial)
639283.Snov_0915+ER
639283.Snov_0518+(mitochondrial)
639283.Snov_0190(PF01970)ER
639283.Snov_1852(PF06455)ER
639283.Snov_1925+ER
639283.Snov_0436+ER; (ER)
639283.Snov_0727(PF13441)ER
639283.Snov_1061(PF13441)ER
639283.Snov_1284+(ER)
639283.Snov_3291+mitochondrial
639283.Snov_1723(PF03069)(mitochondrial); (plastid)
639283.Snov_1727(PF01970)(ER)
639283.Snov_4088+ER
639283.Snov_2705(PF00839)ER
639283.Snov_1733(PF01970)ER; (ER)
639283.Snov_1423(PF00839)ER
639283.Snov_0547(PF01970)ER
639283.Snov_3231+ER
639283.Snov_3236(PF03069)(mitochondrial)
639283.Snov_3484+(mitochondrial)
639283.Snov_3854+ER
639283.Snov_2272(PF13787)ER
639283.Snov_2278(PF01970)(ER)
639283.Snov_1172+ER
639283.Snov_3200(PF01970)ER
639283.Snov_3194+ER
639283.Snov_0902(PF01970)ER
639283.Snov_2803+ER
639283.Snov_1878+(ER)
639283.Snov_0201(PF01970)(ER)
639283.Snov_3350+(plastid)
639283.Snov_4098(PF01970)(ER)
639283.Snov_2656+
639283.Snov_1354+
639283.Snov_0805(PF02689)
639283.Snov_0240+
639283.Snov_3822+
639283.Snov_4333(PF00180)
639283.Snov_0655+
639283.Snov_1039(PF13787)
639283.Snov_1789+
639283.Snov_3006+
639283.Snov_4422+
639283.Snov_0269+
639283.Snov_4140(PF03069)
639283.Snov_2425(PF03069)
639283.Snov_2949+
639283.Snov_1471+
639283.Snov_1877+
639283.Snov_3653(PF01970)
639283.Snov_2745(PF00180)
639283.Snov_1581(PF05292)
639283.Snov_2357+
639283.Snov_1022(PF00180)
639283.Snov_1670+
639283.Snov_1583(PF03959)
639283.Snov_2160(PF00180)
639283.Snov_1596(PF01970)
639283.Snov_0099(PF12471)
639283.Snov_4067(PF00180)
639283.Snov_4467+
639283.Snov_4310+
639283.Snov_1606(PF00180)
639283.Snov_1602(PF00180)
639283.Snov_1601(PF00180)
639283.Snov_1608+
639283.Snov_4477(PF03492)
639283.Snov_4382+
639283.Snov_3153+
639283.Snov_3395(PF01970)
639283.Snov_1722+
639283.Snov_0767+
639283.Snov_2831+
639283.Snov_2727+
639283.Snov_0378(PF03069)
639283.Snov_0477+
639283.Snov_0373(PF01970)
639283.Snov_0377(PF03069)
639283.Snov_3073+
639283.Snov_2197+
639283.Snov_2261(PF01442)
639283.Snov_0100(PF07958)
639283.Snov_2856+
639283.Snov_2291(PF05292)
639283.Snov_1175(PF03069)
639283.Snov_3574(PF01970)
639283.Snov_2082+
639283.Snov_1749(PF09265)
639283.Snov_4130(PF03069)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0.1 (1/10 KEGG proteins)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================