Effective results for Actinobacillus minor NM305 (eggnog40)

Summary

Number of putative secreted proteins: 25
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 14 eukaryotic-like domains, contained in 25 proteins (4 high, 21 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
637911.AM305_05339(PF12762)(mitochondrial)
637911.AM305_08479(PF05704)mitochondrial
637911.AM305_04573(PF12762)(mitochondrial)
637911.AM305_04548(PF12762)(mitochondrial); mitochondrial
637911.AM305_10121(PF12762)(plastid)
637911.AM305_07959(PF03143)not used
637911.AM305_09146(PF13151)
637911.AM305_00764(PF03143)not used
637911.AM305_02713(PF03143)not used
637911.AM305_02398(PF01501)
637911.AM305_05284(PF01501)
637911.AM305_00855(PF12949)
637911.AM305_00519(PF06414)
637911.AM305_08986(PF04664)
637911.AM305_11730(PF05495)
637911.AM305_07703PF10548
637911.AM305_05100PF03175
637911.AM305_04728(PF10063)
637911.AM305_03962PF10548
637911.AM305_03233(PF10571)
637911.AM305_05584(PF05704)
637911.AM305_05579PF09612
637911.AM305_05147(PF03143)not used
637911.AM305_11900(PF06414)
637911.AM305_12055(PF01501)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================