Effective results for Bartonella grahamii as4aup (eggnog40)

Summary

Number of putative secreted proteins: 109
- Predicted by T4SEpre: 89
- Predicted by EffectiveELD: 11 eukaryotic-like domains, contained in 42 proteins (0 high, 42 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
634504.Bgr_18040			+		ER
634504.Bgr_14590				(PF03797)	ER; (ER)
634504.Bgr_16030				(PF03797)	(ER)
634504.Bgr_13000			+		ER
634504.Bgr_19750			+		(ER); ER
634504.Bgr_14550				(PF03797)	ER
634504.Bgr_14570				(PF03797)	(mitochondrial)
634504.Bgr_02720			+		ER
634504.Bgr_01390			+		(mitochondrial)
634504.Bgr_17260				(PF09295)	(ER)
634504.Bgr_09720				(PF03797)	ER
634504.Bgr_07210			+		ER
634504.Bgr_10430				(PF06455)	ER
634504.Bgr_18170			+		ER
634504.Bgr_08440			+		(ER)
634504.Bgr_14600				(PF03797)	ER
634504.Bgr_06510			+		ER
634504.Bgr_18610			+		(mitochondrial)
634504.Bgr_00630			+		(mitochondrial)
634504.Bgr_07270			+		ER
634504.Bgr_16620			+		ER
634504.Bgr_04460			+		ER
634504.Bgr_01820			+		ER
634504.Bgr_19990			+		ER
634504.Bgr_14560				(PF03797)	ER
634504.Bgr_06330				(PF03797)	ER
634504.Bgr_16410			+		ER
634504.Bgr_16070				(PF03797)	mitochondrial; (mitochondrial)
634504.Bgr_14400			+		(mitochondrial)
634504.Bgr_18030			+		ER; (ER)
634504.Bgr_00560			+		(mitochondrial)
634504.Bgr_10230				(PF00959)	(mitochondrial)
634504.Bgr_20230			+		ER
634504.Bgr_06350				(PF03797)	ER
634504.Bgr_14580				(PF03797)	(mitochondrial)
634504.Bgr_19250			+		ER
634504.Bgr_12500				(PF03797)	ER; (mitochondrial)
634504.Bgr_06340				(PF03797)	ER
634504.Bgr_16040				(PF03797)	mitochondrial
634504.Bgr_12430			+		ER
634504.Bgr_16150				(PF03796) (PF00772)
634504.Bgr_07600			+	(PF09588)
634504.Bgr_14030			+		(mitochondrial)
634504.Bgr_09390			+		(mitochondrial)
634504.Bgr_14980			+		(ER)
634504.Bgr_12720			+		(plastid)
634504.Bgr_12600			+		(mitochondrial)
634504.Bgr_17720				(PF00959)	(mitochondrial)
634504.Bgr_09050			+		(plastid)
634504.Bgr_09860				(PF09588)	(mitochondrial)
634504.Bgr_03560			+		(plastid)
634504.Bgr_07780				(PF03796) (PF00772)
634504.Bgr_14480				(PF03796) (PF00772)
634504.Bgr_06110				(PF03796) (PF00772)
634504.Bgr_09780				(PF03796) (PF00772)
634504.Bgr_09300				(PF09588)	(mitochondrial)
634504.Bgr_18680			+
634504.Bgr_08920			+
634504.Bgr_03440			+
634504.Bgr_14450			+
634504.Bgr_17030			+
634504.Bgr_13790			+
634504.Bgr_09900			+
634504.Bgr_01730			+
634504.Bgr_08650				(PF00959)
634504.Bgr_02270			+
634504.Bgr_18660			+
634504.Bgr_13870			+
634504.Bgr_08530				(PF00959)
634504.Bgr_03280				(PF00959)
634504.Bgr_15850				(PF13148)
634504.Bgr_03060			+
634504.Bgr_03480			+
634504.Bgr_08840				(PF04218)
634504.Bgr_03650			+
634504.Bgr_07030			+
634504.Bgr_15670			+
634504.Bgr_02740			+
634504.Bgr_05500				(PF12344)
634504.Bgr_03820				(PF09588)
634504.Bgr_03910			+
634504.Bgr_07940			+
634504.Bgr_12910			+
634504.Bgr_19700				(PF09731)
634504.Bgr_12630			+
634504.Bgr_05520				(PF12344)
634504.Bgr_17390				(PF09588)
634504.Bgr_17880			+
634504.Bgr_09260			+
634504.Bgr_01050			+
634504.Bgr_15000			+
634504.Bgr_12840				(PF13148)
634504.Bgr_05790			+
634504.Bgr_03160			+
634504.Bgr_12380			+
634504.Bgr_18830			+
634504.Bgr_03790			+
634504.Bgr_18920			+
634504.Bgr_17070				(PF13148)
634504.Bgr_10550			+
634504.Bgr_13910			+
634504.Bgr_04450			+
634504.Bgr_06100			+
634504.Bgr_16080				(PF03797)
634504.Bgr_02920				(PF00959)
634504.Bgr_08960			+
634504.Bgr_08360				(PF13148)
634504.Bgr_00350			+
634504.Bgr_03180				(PF00959)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
• T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: YES (FDR = 7.2 %)
  Estimated copy number = 2.5 (25/10 KEGG proteins)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================