Metamenu

Effective results for Phascolarctobacterium succinatutens YIT 12067 (eggnog40)

Summary

Number of putative secreted proteins: 38
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 12 eukaryotic-like domains, contained in 38 proteins (0 high, 38 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
626939.HMPREF9443_01849(PF03600)ER; (ER)
626939.HMPREF9443_01386(PF03600)ER
626939.HMPREF9443_01745(PF13173)(mitochondrial)
626939.HMPREF9443_02028(PF03600)ER
626939.HMPREF9443_01353(PF03600)ER
626939.HMPREF9443_02030(PF03600)ER
626939.HMPREF9443_01364(PF13173)mitochondrial
626939.HMPREF9443_00436(PF03600)ER
626939.HMPREF9443_00334(PF03600)ER
626939.HMPREF9443_02178(PF13173)(mitochondrial)
626939.HMPREF9443_01313(PF13173)(mitochondrial)
626939.HMPREF9443_00474(PF13173)(mitochondrial); mitochondrial
626939.HMPREF9443_01292(PF02256) (PF02906)
626939.HMPREF9443_01111(PF02256) (PF02906)
626939.HMPREF9443_01982(PF02256) (PF02906)
626939.HMPREF9443_01608(PF01470)
626939.HMPREF9443_01607(PF06414)
626939.HMPREF9443_01602(PF13173)
626939.HMPREF9443_00108(PF04446)
626939.HMPREF9443_00498(PF06968)
626939.HMPREF9443_01285(PF02906)
626939.HMPREF9443_01015(PF01470)
626939.HMPREF9443_01390(PF04326)
626939.HMPREF9443_00359(PF13151)
626939.HMPREF9443_01810(PF04326)
626939.HMPREF9443_01818(PF06414)
626939.HMPREF9443_01342(PF06968)
626939.HMPREF9443_01565(PF04326)
626939.HMPREF9443_00984(PF01470)
626939.HMPREF9443_00163(PF06968)
626939.HMPREF9443_01781(PF13173)
626939.HMPREF9443_01962(PF12646)
626939.HMPREF9443_01155(PF04326)
626939.HMPREF9443_01790(PF01969)
626939.HMPREF9443_01791(PF01969)
626939.HMPREF9443_00333(PF03600)not used
626939.HMPREF9443_01314(PF02906)
626939.HMPREF9443_00041(PF06968)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================