Effective results for Shuttleworthia satelles DSM 14600 (eggnog40)

Summary

Number of putative secreted proteins: 17
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 7 eukaryotic-like domains, contained in 17 proteins (1 high, 16 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
626523.GCWU000342_02119(PF13173)(mitochondrial)
626523.GCWU000342_02116(PF13173)mitochondrial
626523.GCWU000342_00268(PF13173)(mitochondrial)
626523.GCWU000342_01515(PF00203)mitochondrial
626523.GCWU000342_02324(PF00203)(mitochondrial)
626523.GCWU000342_00856(PF12646)(mitochondrial)
626523.GCWU000342_01968(PF13173)
626523.GCWU000342_00243(PF08840)
626523.GCWU000342_00437(PF14512)
626523.GCWU000342_01724PF05216
626523.GCWU000342_00253(PF08840)
626523.GCWU000342_00282(PF08840)
626523.GCWU000342_00272(PF13173)
626523.GCWU000342_00048(PF14512)
626523.GCWU000342_01527(PF14249)
626523.GCWU000342_02153(PF13173)
626523.GCWU000342_01545(PF13173)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================