Metamenu

Effective results for Leptotrichia goodfellowii F0264 (eggnog40)

Summary

Number of putative secreted proteins: 59
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 14 eukaryotic-like domains, contained in 59 proteins (13 high, 46 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
596323.HMPREF0554_0537(PF03724)ER
596323.HMPREF0554_0538(PF03724)ER
596323.HMPREF0554_1005(PF04402)ER
596323.HMPREF0554_1550(PF04468)(mitochondrial)
596323.HMPREF0554_0151(PF03724)ER
596323.HMPREF0554_0485(PF03083)ER
596323.HMPREF0554_0027(PF04402)ER
596323.HMPREF0554_0025(PF04402)ER
596323.HMPREF0554_0599(PF03724)ER
596323.HMPREF0554_1978PF04572 (PF04488)
596323.HMPREF0554_0029(PF00359)(mitochondrial)
596323.HMPREF0554_1080PF04572 (PF04488)
596323.HMPREF0554_0432(PF00359)
596323.HMPREF0554_1322PF13332not used
596323.HMPREF0554_2461PF13332not used
596323.HMPREF0554_2462PF13332not used
596323.HMPREF0554_0422(PF03797)not used
596323.HMPREF0554_0421PF13332
596323.HMPREF0554_0352(PF03797)
596323.HMPREF0554_2290PF13332
596323.HMPREF0554_1162(PF00359)
596323.HMPREF0554_2289PF13332not used
596323.HMPREF0554_1976(PF05704)
596323.HMPREF0554_1977PF09612
596323.HMPREF0554_0371(PF01496)
596323.HMPREF0554_0376(PF00359)
596323.HMPREF0554_0389(PF03797)
596323.HMPREF0554_0442(PF00359)
596323.HMPREF0554_0559(PF04468)not used
596323.HMPREF0554_0558(PF04468)
596323.HMPREF0554_1956(PF00359)
596323.HMPREF0554_0159(PF03083)
596323.HMPREF0554_2099PF13332not used
596323.HMPREF0554_0019PF13332not used
596323.HMPREF0554_1944(PF00359)
596323.HMPREF0554_1833(PF00359)
596323.HMPREF0554_2406(PF03797)not used
596323.HMPREF0554_2405(PF03797)not used
596323.HMPREF0554_0480(PF00359)
596323.HMPREF0554_1289(PF00359)
596323.HMPREF0554_1194(PF03797)
596323.HMPREF0554_0039(PF00359)
596323.HMPREF0554_0030(PF00359)
596323.HMPREF0554_0037(PF00359)
596323.HMPREF0554_0855(PF01991)
596323.HMPREF0554_0455(PF03797)
596323.HMPREF0554_2204(PF03797)
596323.HMPREF0554_0735(PF03797)
596323.HMPREF0554_0026(PF04402)
596323.HMPREF0554_1518(PF00359)
596323.HMPREF0554_0114(PF09511)not used
596323.HMPREF0554_2236PF13332
596323.HMPREF0554_0902(PF03797)not used
596323.HMPREF0554_0479(PF00359)
596323.HMPREF0554_2328PF13332not used
596323.HMPREF0554_0853(PF01496)not used
596323.HMPREF0554_2335(PF00359)
596323.HMPREF0554_2336(PF00359)
596323.HMPREF0554_2246(PF03797)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================