Effective results for Tolumonas auensis DSM 9187 (eggnog40)

Summary

Number of putative secreted proteins: 32
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 11 eukaryotic-like domains, contained in 32 proteins (2 high, 30 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
595494.Tola_2613				(PF00834)	(ER); ER
595494.Tola_0954				(PF05548)	(mitochondrial)
595494.Tola_1703				(PF00871)	mitochondrial; (mitochondrial)
595494.Tola_1212				(PF01729) (PF02749)
595494.Tola_1657				(PF01729) (PF02749)
595494.Tola_2587				(PF01729) (PF02749)
595494.Tola_1483				(PF04193)	(ER)
595494.Tola_2309				(PF00923)
595494.Tola_1978				(PF00834)
595494.Tola_1971				(PF00834)
595494.Tola_1368				(PF00871)
595494.Tola_0639				(PF13875)
595494.Tola_3071				(PF00456)
595494.Tola_3070				(PF00923)
595494.Tola_1256				(PF00456)
595494.Tola_2473				(PF00871)
595494.Tola_1896				(PF00871)
595494.Tola_1893				(PF00923)
595494.Tola_1614				PF11951
595494.Tola_0666				PF11331
595494.Tola_0878				(PF00871)
595494.Tola_1839				(PF00456)
595494.Tola_1838				(PF00923)
595494.Tola_1833				(PF00456)
595494.Tola_2164				(PF00456)
595494.Tola_2163				(PF00923)
595494.Tola_3088				(PF00456)
595494.Tola_2576				(PF00456)
595494.Tola_3087				(PF00923)
595494.Tola_2985				(PF04193)
595494.Tola_3156				(PF00456)
595494.Tola_3157				(PF00923)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================