Effective results for Cellvibrio gilvus ATCC 13127 (eggnog40)

Summary

Number of putative secreted proteins: 32
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 10 eukaryotic-like domains, contained in 32 proteins (2 high, 30 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
593907.Celgi_2403				(PF07679) (PF00331) (PF13927)	ER
593907.Celgi_0632				(PF00331) (PF00553)	ER
593907.Celgi_2074				(PF07679) (PF13927)	(mitochondrial)
593907.Celgi_1040				(PF00331) (PF00553)	(mitochondrial)
593907.Celgi_2718				(PF00553) (PF01341)	ER
593907.Celgi_3149				(PF00331) (PF00553)	ER
593907.Celgi_2723				(PF01341)	ER
593907.Celgi_3134				(PF00553)	mitochondrial; (mitochondrial)
593907.Celgi_2269				(PF01341)	ER
593907.Celgi_2669				(PF00553)	ER
593907.Celgi_1508				(PF03639)	ER
593907.Celgi_1697				(PF01341) (PF00553)	(ER)
593907.Celgi_1696				(PF00553)	(mitochondrial); (ER)
593907.Celgi_0262				(PF03596)	ER
593907.Celgi_0019				(PF00553)	mitochondrial
593907.Celgi_0277				(PF00553)	ER
593907.Celgi_2254				(PF00553)	ER
593907.Celgi_0234				(PF03596)	(ER); ER
593907.Celgi_2810				(PF02012)	mitochondrial
593907.Celgi_2958				(PF00553)	ER
593907.Celgi_3003				(PF00553)	ER; (ER)
593907.Celgi_1891				(PF00553)	ER
593907.Celgi_2963				(PF00553)	ER
593907.Celgi_2637				(PF00553)	ER
593907.Celgi_0052				(PF03639)	(ER)
593907.Celgi_1889				(PF00331)
593907.Celgi_1915				(PF00331)
593907.Celgi_0311				(PF07679)
593907.Celgi_2925				PF07460
593907.Celgi_0270				(PF02012)
593907.Celgi_1272				(PF00553)
593907.Celgi_2562				PF08213	not used

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================