Metamenu

Effective results for Abiotrophia defectiva ATCC 49176 (eggnog40)

Summary

Number of putative secreted proteins: 129
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 21 eukaryotic-like domains, contained in 129 proteins (32 high, 97 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
592010.GCWU000182_01355(PF05738)ER
592010.GCWU000182_01352(PF05738)ER
592010.GCWU000182_02275(PF06250)(mitochondrial)
592010.GCWU000182_00361(PF00664)mitochondrial
592010.GCWU000182_00362(PF00664)(mitochondrial)
592010.GCWU000182_01189PF13173(mitochondrial)
592010.GCWU000182_02679(PF11175)mitochondrial; (mitochondrial)
592010.GCWU000182_00374PF13173(mitochondrial)
592010.GCWU000182_01571(PF05738)ER
592010.GCWU000182_01574(PF06280)ER
592010.GCWU000182_02993(PF00664)(ER)
592010.GCWU000182_01788(PF00664)(ER)
592010.GCWU000182_01789(PF00664)(ER)
592010.GCWU000182_03051(PF02361)ER
592010.GCWU000182_02256(PF07787)(mitochondrial)
592010.GCWU000182_02551(PF00664)ER
592010.GCWU000182_02552(PF00664)mitochondrial
592010.GCWU000182_00417PF13173(mitochondrial); mitochondrial
592010.GCWU000182_00337(PF00664)(ER)
592010.GCWU000182_01200(PF03644)ER
592010.GCWU000182_02149(PF00664)mitochondrial; (mitochondrial)
592010.GCWU000182_02033PF13173mitochondrial
592010.GCWU000182_02814(PF16472)ER; (ER)
592010.GCWU000182_01354(PF05738)ER
592010.GCWU000182_01353(PF05738)ER
592010.GCWU000182_01581(PF02361)ER
592010.GCWU000182_01070(PF02661)(mitochondrial); (plastid)
592010.GCWU000182_00443(PF00664)(ER)
592010.GCWU000182_02179(PF00664)(ER); (mitochondrial)
592010.GCWU000182_02752(PF00664)ER
592010.GCWU000182_02751(PF00664)(mitochondrial)
592010.GCWU000182_02352PF13173mitochondrial
592010.GCWU000182_01735(PF00664)(mitochondrial); mitochondrial
592010.GCWU000182_02925(PF02661)ER; (ER)
592010.GCWU000182_01722(PF00664)mitochondrial
592010.GCWU000182_02600(PF02361)ER
592010.GCWU000182_02602(PF00664)(mitochondrial)
592010.GCWU000182_02603(PF00664)mitochondrial
592010.GCWU000182_02116(PF11175)(mitochondrial); (plastid)
592010.GCWU000182_00958(PF00664)(mitochondrial)
592010.GCWU000182_00714(PF02361)(ER)
592010.GCWU000182_00716(PF00664)mitochondrial
592010.GCWU000182_02638(PF02361)ER
592010.GCWU000182_02632(PF08840)ER
592010.GCWU000182_01296(PF00664)mitochondrial
592010.GCWU000182_01746(PF00664)mitochondrial
592010.GCWU000182_02083PF13173(mitochondrial)
592010.GCWU000182_02262(PF02661)(ER)
592010.GCWU000182_02642(PF00664)(mitochondrial)
592010.GCWU000182_01977PF13173(mitochondrial)
592010.GCWU000182_02992(PF00664)(ER)
592010.GCWU000182_03147PF13173(ER)
592010.GCWU000182_01396(PF00664)(mitochondrial)
592010.GCWU000182_01738(PF02361)(ER)
592010.GCWU000182_01724(PF02361)(ER)
592010.GCWU000182_01624(PF13151)(mitochondrial)
592010.GCWU000182_02276(PF06250)
592010.GCWU000182_03055PF04326
592010.GCWU000182_02177PF13173
592010.GCWU000182_02178(PF00664)
592010.GCWU000182_02641(PF00664)
592010.GCWU000182_00373PF13173
592010.GCWU000182_01377(PF06250)
592010.GCWU000182_02071(PF02661)
592010.GCWU000182_02181(PF02361)
592010.GCWU000182_02210(PF02475)
592010.GCWU000182_02670(PF06280)
592010.GCWU000182_00301PF04326
592010.GCWU000182_00786(PF00664)
592010.GCWU000182_00785(PF00664)
592010.GCWU000182_02063(PF06250)
592010.GCWU000182_02199PF04326
592010.GCWU000182_02844PF04326
592010.GCWU000182_03004(PF01637)
592010.GCWU000182_03315PF13173
592010.GCWU000182_03314PF13173
592010.GCWU000182_01831PF06209
592010.GCWU000182_00401(PF00664)
592010.GCWU000182_02056(PF02661)
592010.GCWU000182_03305PF00054
592010.GCWU000182_01305(PF16472)
592010.GCWU000182_01437(PF01991)
592010.GCWU000182_02043PF13173
592010.GCWU000182_00553(PF02661)
592010.GCWU000182_01118PF04326
592010.GCWU000182_02963PF13173
592010.GCWU000182_00638(PF02361)
592010.GCWU000182_01074PF13173
592010.GCWU000182_00442(PF00664)
592010.GCWU000182_02028(PF14512)
592010.GCWU000182_02029PF04326
592010.GCWU000182_02790PF04326
592010.GCWU000182_02575(PF00664)
592010.GCWU000182_02579PF04326
592010.GCWU000182_00440(PF02361)
592010.GCWU000182_01269(PF02361)
592010.GCWU000182_02164(PF02661)
592010.GCWU000182_02347(PF02661)
592010.GCWU000182_02349(PF00664)
592010.GCWU000182_03181PF04326
592010.GCWU000182_01272(PF00664)
592010.GCWU000182_01273(PF00664)
592010.GCWU000182_01874(PF00162)
592010.GCWU000182_01010(PF00162)
592010.GCWU000182_01015PF13173
592010.GCWU000182_02912(PF01637)
592010.GCWU000182_02595(PF06250)
592010.GCWU000182_02353(PF14512)
592010.GCWU000182_02351PF13173
592010.GCWU000182_01395(PF00664)
592010.GCWU000182_01734(PF00664)
592010.GCWU000182_01721(PF00664)
592010.GCWU000182_02421(PF02661)
592010.GCWU000182_02422(PF00664)
592010.GCWU000182_02423(PF00664)
592010.GCWU000182_00717(PF00664)
592010.GCWU000182_01752(PF02661)
592010.GCWU000182_02704(PF02661)
592010.GCWU000182_02701(PF06250)
592010.GCWU000182_03074PF13173
592010.GCWU000182_03071(PF08840)
592010.GCWU000182_03272(PF01637)
592010.GCWU000182_00650PF13173
592010.GCWU000182_01295(PF00664)
592010.GCWU000182_01748PF13173
592010.GCWU000182_01744(PF02361)
592010.GCWU000182_01745(PF00664)
592010.GCWU000182_02626(PF02361)
592010.GCWU000182_02621PF13173

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================