Effective results for Rickettsiella grylli (eggnog40)
Summary
Number of putative secreted proteins: 97
- Predicted by T4SEpre: 95
- Predicted by EffectiveELD: 9 eukaryotic-like domains, contained in 32 proteins (5 high, 27 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
---|---|---|---|---|---|
59196.RICGR_0484 | + | ER | |||
59196.RICGR_1478 | + | mitochondrial; (mitochondrial) | |||
59196.RICGR_0720 | (PF00161) | ER | |||
59196.RICGR_0827 | + | mitochondrial; (mitochondrial) | |||
59196.RICGR_0525 | (PF13637) | mitochondrial | |||
59196.RICGR_1245 | + | (ER) | |||
59196.RICGR_0835 | + | (mitochondrial) | |||
59196.RICGR_0834 | + | (mitochondrial) | |||
59196.RICGR_0631 | + | ER | |||
59196.RICGR_0745 | + | ER | |||
59196.RICGR_0190 | + | ER | |||
59196.RICGR_0160 | (PF13637) | (mitochondrial) | |||
59196.RICGR_1209 | + | ER | |||
59196.RICGR_1110 | + | ER | |||
59196.RICGR_0792 | + | (ER) | |||
59196.RICGR_1414 | + | ER | |||
59196.RICGR_0552 | + | (ER) | |||
59196.RICGR_1403 | + | ER | |||
59196.RICGR_1547 | + | ER | |||
59196.RICGR_0543 | + | ER | |||
59196.RICGR_0842 | + | ER | |||
59196.RICGR_1156 | + | ER | |||
59196.RICGR_1150 | + | ER | |||
59196.RICGR_0008 | + | (ER) | |||
59196.RICGR_1344 | + | (PF16715) | |||
59196.RICGR_0139 | + | (PF16715) | |||
59196.RICGR_0420 | + | (mitochondrial) | |||
59196.RICGR_0358 | + | (ER) | |||
59196.RICGR_0319 | PF08373 | (mitochondrial) | |||
59196.RICGR_1541 | + | (ER) | |||
59196.RICGR_1182 | (PF02178) | (mitochondrial) | |||
59196.RICGR_0710 | + | ||||
59196.RICGR_0716 | + | ||||
59196.RICGR_0717 | PF06597 | ||||
59196.RICGR_0718 | PF06597 | ||||
59196.RICGR_0908 | + | ||||
59196.RICGR_0870 | (PF00023) | ||||
59196.RICGR_0679 | + | ||||
59196.RICGR_1273 | + | ||||
59196.RICGR_0675 | + | ||||
59196.RICGR_0013 | (PF00872) | ||||
59196.RICGR_0010 | (PF00872) | ||||
59196.RICGR_0803 | + | ||||
59196.RICGR_1281 | + | ||||
59196.RICGR_0247 | + | ||||
59196.RICGR_0738 | (PF13637) | ||||
59196.RICGR_0739 | + | ||||
59196.RICGR_0722 | + | ||||
59196.RICGR_0291 | (PF00872) | ||||
59196.RICGR_0445 | (PF00872) | ||||
59196.RICGR_0442 | (PF00872) | ||||
59196.RICGR_1247 | + | ||||
59196.RICGR_0620 | + | ||||
59196.RICGR_0280 | + | ||||
59196.RICGR_0838 | + | ||||
59196.RICGR_0637 | + | ||||
59196.RICGR_1138 | + | ||||
59196.RICGR_1008 | + | ||||
59196.RICGR_0510 | + | ||||
59196.RICGR_0198 | PF08964 | ||||
59196.RICGR_0172 | + | ||||
59196.RICGR_0177 | + | ||||
59196.RICGR_1105 | + | ||||
59196.RICGR_0613 | PF08964 | ||||
59196.RICGR_0501 | + | ||||
59196.RICGR_0180 | + | ||||
59196.RICGR_0672 | + | ||||
59196.RICGR_0477 | (PF00023) | ||||
59196.RICGR_0975 | (PF00872) | ||||
59196.RICGR_0885 | + | ||||
59196.RICGR_1027 | + | ||||
59196.RICGR_1201 | + | ||||
59196.RICGR_0960 | + | ||||
59196.RICGR_1567 | (PF00872) | ||||
59196.RICGR_1308 | + | ||||
59196.RICGR_1416 | (PF00872) | ||||
59196.RICGR_1418 | (PF00872) | ||||
59196.RICGR_0781 | + | ||||
59196.RICGR_1094 | + | ||||
59196.RICGR_1545 | (PF00872) | ||||
59196.RICGR_1543 | (PF00872) | ||||
59196.RICGR_0302 | (PF00872) | ||||
59196.RICGR_0438 | + | ||||
59196.RICGR_0930 | (PF00872) | ||||
59196.RICGR_1430 | + | ||||
59196.RICGR_0843 | + | ||||
59196.RICGR_1558 | + | ||||
59196.RICGR_1333 | + | ||||
59196.RICGR_1427 | + | ||||
59196.RICGR_0852 | + | ||||
59196.RICGR_0851 | (PF00023) | ||||
59196.RICGR_1521 | (PF13637) | ||||
59196.RICGR_1522 | (PF00872) | ||||
59196.RICGR_0211 | + | ||||
59196.RICGR_0218 | (PF00872) | ||||
59196.RICGR_0869 | + | ||||
59196.RICGR_0141 | (PF00872) |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
- T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: YES (FDR = 0.5 %)
- Functional Type III secretion system: NO (FDR = 12.5 %)
- Functional Type IV secretion system: YES (FDR = 7.2 %)
Estimated copy number = 0.7 (7/10 KEGG proteins)
- Functional Type VI secretion system: NO (FDR = 7.7 %)
Individual results for each secretion system
- List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
- List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
- List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
- List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)
Parameters:
==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================
Estimated copy number = 0.7 (7/10 KEGG proteins)