Effective results for Rickettsiella grylli (eggnog40)

Summary

Number of putative secreted proteins: 97
- Predicted by T4SEpre: 95
- Predicted by EffectiveELD: 9 eukaryotic-like domains, contained in 32 proteins (5 high, 27 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
59196.RICGR_0484+ER
59196.RICGR_1478+mitochondrial; (mitochondrial)
59196.RICGR_0720(PF00161)ER
59196.RICGR_0827+mitochondrial; (mitochondrial)
59196.RICGR_0525(PF13637)mitochondrial
59196.RICGR_1245+(ER)
59196.RICGR_0835+(mitochondrial)
59196.RICGR_0834+(mitochondrial)
59196.RICGR_0631+ER
59196.RICGR_0745+ER
59196.RICGR_0190+ER
59196.RICGR_0160(PF13637)(mitochondrial)
59196.RICGR_1209+ER
59196.RICGR_1110+ER
59196.RICGR_0792+(ER)
59196.RICGR_1414+ER
59196.RICGR_0552+(ER)
59196.RICGR_1403+ER
59196.RICGR_1547+ER
59196.RICGR_0543+ER
59196.RICGR_0842+ER
59196.RICGR_1156+ER
59196.RICGR_1150+ER
59196.RICGR_0008+(ER)
59196.RICGR_1344+(PF16715)
59196.RICGR_0139+(PF16715)
59196.RICGR_0420+(mitochondrial)
59196.RICGR_0358+(ER)
59196.RICGR_0319PF08373(mitochondrial)
59196.RICGR_1541+(ER)
59196.RICGR_1182(PF02178)(mitochondrial)
59196.RICGR_0710+
59196.RICGR_0716+
59196.RICGR_0717PF06597
59196.RICGR_0718PF06597
59196.RICGR_0908+
59196.RICGR_0870(PF00023)
59196.RICGR_0679+
59196.RICGR_1273+
59196.RICGR_0675+
59196.RICGR_0013(PF00872)
59196.RICGR_0010(PF00872)
59196.RICGR_0803+
59196.RICGR_1281+
59196.RICGR_0247+
59196.RICGR_0738(PF13637)
59196.RICGR_0739+
59196.RICGR_0722+
59196.RICGR_0291(PF00872)
59196.RICGR_0445(PF00872)
59196.RICGR_0442(PF00872)
59196.RICGR_1247+
59196.RICGR_0620+
59196.RICGR_0280+
59196.RICGR_0838+
59196.RICGR_0637+
59196.RICGR_1138+
59196.RICGR_1008+
59196.RICGR_0510+
59196.RICGR_0198PF08964
59196.RICGR_0172+
59196.RICGR_0177+
59196.RICGR_1105+
59196.RICGR_0613PF08964
59196.RICGR_0501+
59196.RICGR_0180+
59196.RICGR_0672+
59196.RICGR_0477(PF00023)
59196.RICGR_0975(PF00872)
59196.RICGR_0885+
59196.RICGR_1027+
59196.RICGR_1201+
59196.RICGR_0960+
59196.RICGR_1567(PF00872)
59196.RICGR_1308+
59196.RICGR_1416(PF00872)
59196.RICGR_1418(PF00872)
59196.RICGR_0781+
59196.RICGR_1094+
59196.RICGR_1545(PF00872)
59196.RICGR_1543(PF00872)
59196.RICGR_0302(PF00872)
59196.RICGR_0438+
59196.RICGR_0930(PF00872)
59196.RICGR_1430+
59196.RICGR_0843+
59196.RICGR_1558+
59196.RICGR_1333+
59196.RICGR_1427+
59196.RICGR_0852+
59196.RICGR_0851(PF00023)
59196.RICGR_1521(PF13637)
59196.RICGR_1522(PF00872)
59196.RICGR_0211+
59196.RICGR_0218(PF00872)
59196.RICGR_0869+
59196.RICGR_0141(PF00872)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0.7 (7/10 KEGG proteins)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================