Metamenu

Effective results for Streptomyces sp. SPB78 (eggnog40)

Summary

Number of putative secreted proteins: 130
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 21 eukaryotic-like domains, contained in 130 proteins (14 high, 116 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
591157.SSLG_00704(PF01510)ER
591157.SSLG_05671(PF03029)(ER)
591157.SSLG_04197(PF13560)(mitochondrial)
591157.SSLG_03598(PF13560)mitochondrial
591157.SSLG_05032(PF13560)mitochondrial
591157.SSLG_01451(PF04886)(mitochondrial); plastid
591157.SSLG_02932(PF13560)(mitochondrial)
591157.SSLG_03576(PF13560)mitochondrial
591157.SSLG_00189(PF07931)(ER)
591157.SSLG_03393(PF00165)(ER)
591157.SSLG_04158(PF01510)ER; (ER)
591157.SSLG_06083(PF01510)ER; (ER)
591157.SSLG_00020(PF03457)(mitochondrial)
591157.SSLG_04420(PF01255)(mitochondrial)
591157.SSLG_00510(PF01327)(mitochondrial)
591157.SSLG_01661(PF01510)mitochondrial
591157.SSLG_06157(PF01255)(mitochondrial)
591157.SSLG_05531(PF13560)(mitochondrial)
591157.SSLG_00656(PF03029)(ER)
591157.SSLG_05927(PF03659)ER
591157.SSLG_03448(PF13560)mitochondrial; (mitochondrial)
591157.SSLG_02522(PF13560)(mitochondrial)
591157.SSLG_05170(PF02055)ER
591157.SSLG_04143PF13565(mitochondrial)
591157.SSLG_04129(PF13560)(plastid)
591157.SSLG_02305PF13565(mitochondrial)
591157.SSLG_01536(PF13560)plastid
591157.SSLG_04195PF13565(mitochondrial)
591157.SSLG_06383PF13565(mitochondrial)
591157.SSLG_06158PF13565(mitochondrial)
591157.SSLG_06055(PF02055)(plastid)
591157.SSLG_06074PF13565(mitochondrial)
591157.SSLG_05704PF13565(mitochondrial)
591157.SSLG_06299(PF01510)plastid
591157.SSLG_01854PF13565(mitochondrial)
591157.SSLG_00009(PF03457)(plastid)
591157.SSLG_03866PF13565(mitochondrial)
591157.SSLG_03839PF13565(mitochondrial)
591157.SSLG_02224(PF13560)(mitochondrial)
591157.SSLG_03152(PF01510)(plastid)
591157.SSLG_04465PF13565(mitochondrial)
591157.SSLG_03635(PF01510)(plastid)
591157.SSLG_01901PF13565(mitochondrial)
591157.SSLG_01126PF13565(mitochondrial)
591157.SSLG_05150PF13565(mitochondrial)
591157.SSLG_04826(PF01510)not used
591157.SSLG_02508(PF13560)
591157.SSLG_02506(PF01327)
591157.SSLG_00052(PF11523)
591157.SSLG_01185(PF13560)
591157.SSLG_04635(PF13560)
591157.SSLG_02367(PF09445)
591157.SSLG_06098(PF03029)
591157.SSLG_04869(PF03029)
591157.SSLG_00032(PF13560)
591157.SSLG_04678(PF03029)
591157.SSLG_05803(PF05448)
591157.SSLG_06346(PF13560)
591157.SSLG_05862(PF13560)
591157.SSLG_05869(PF01510)
591157.SSLG_02626(PF13560)
591157.SSLG_06384(PF14311)
591157.SSLG_03126(PF13560)
591157.SSLG_04474(PF05448)
591157.SSLG_04286(PF13560)
591157.SSLG_01679(PF13560)
591157.SSLG_03104(PF13560)
591157.SSLG_04755(PF13560)
591157.SSLG_01479(PF01327)
591157.SSLG_03763(PF13560)
591157.SSLG_01692(PF01255)
591157.SSLG_01995(PF13560)
591157.SSLG_03149(PF01510)
591157.SSLG_02893(PF13560)
591157.SSLG_04519(PF13560)
591157.SSLG_02689(PF13560)
591157.SSLG_01172(PF03668)
591157.SSLG_02835(PF07931)
591157.SSLG_02474(PF13560)
591157.SSLG_05729(PF13560)
591157.SSLG_04130(PF13560)
591157.SSLG_02258(PF00777)
591157.SSLG_01754(PF13560)
591157.SSLG_05768(PF03029)
591157.SSLG_04609(PF01327)
591157.SSLG_00856(PF13560)
591157.SSLG_02999(PF16565)
591157.SSLG_00025(PF03457)
591157.SSLG_01529(PF03029)
591157.SSLG_04006(PF13560)
591157.SSLG_04873(PF03029)
591157.SSLG_02848(PF13560)
591157.SSLG_05258(PF02055)
591157.SSLG_01546(PF13560)
591157.SSLG_05276(PF13560)
591157.SSLG_04049(PF13560)
591157.SSLG_03338(PF13560)
591157.SSLG_02068(PF13560)
591157.SSLG_04233(PF13560)
591157.SSLG_06000(PF00102)
591157.SSLG_02006(PF13560)
591157.SSLG_01010(PF12862)
591157.SSLG_02630(PF01510)
591157.SSLG_05557(PF13560)
591157.SSLG_03865(PF13560)
591157.SSLG_00274(PF13560)
591157.SSLG_05345(PF13560)
591157.SSLG_05342(PF13560)
591157.SSLG_02185(PF13560)
591157.SSLG_02960(PF13560)
591157.SSLG_06159(PF01255)
591157.SSLG_02798(PF13560)
591157.SSLG_03389(PF13560)
591157.SSLG_03633(PF13560)
591157.SSLG_00971(PF13560)
591157.SSLG_01934(PF13560)
591157.SSLG_04449(PF13560)not used
591157.SSLG_03052(PF13560)
591157.SSLG_05900(PF01327)
591157.SSLG_05902(PF03029)
591157.SSLG_03420(PF03668)
591157.SSLG_04048(PF03668)
591157.SSLG_00427(PF13560)
591157.SSLG_00212(PF13560)
591157.SSLG_00863(PF03029)
591157.SSLG_04095(PF13560)
591157.SSLG_03381(PF13560)
591157.SSLG_01725(PF13560)
591157.SSLG_05382(PF05448)
591157.SSLG_00095(PF03029)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================