Effective results for Desulfurivibrio alkaliphilus AHT 2 (eggnog40)

Summary

Number of putative secreted proteins: 51
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 15 eukaryotic-like domains, contained in 51 proteins (3 high, 48 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
589865.DaAHT2_0409				(PF05140)	ER
589865.DaAHT2_1098				(PF03567)	(mitochondrial); (plastid)
589865.DaAHT2_1096				(PF03567)	(mitochondrial)
589865.DaAHT2_2456				(PF00543)	(mitochondrial)
589865.DaAHT2_1086				(PF03567)	(mitochondrial)
589865.DaAHT2_1088				(PF03567)	(mitochondrial); mitochondrial
589865.DaAHT2_1406				(PF13173)	ER; (ER)
589865.DaAHT2_1405				(PF13173)	(mitochondrial)
589865.DaAHT2_1401				(PF13173)	mitochondrial
589865.DaAHT2_0115				(PF04187)	ER
589865.DaAHT2_2066				PF13513	(mitochondrial)
589865.DaAHT2_2413				PF16058	ER
589865.DaAHT2_0780				(PF05140)	mitochondrial
589865.DaAHT2_2657				(PF10143)	(ER)
589865.DaAHT2_1812				(PF13173)	(mitochondrial)
589865.DaAHT2_0386				(PF02516)	ER
589865.DaAHT2_0249				(PF05140)	(ER)
589865.DaAHT2_1817				(PF13173)	(mitochondrial)
589865.DaAHT2_1728				(PF00543)	(mitochondrial)
589865.DaAHT2_1145				(PF00847)	(mitochondrial)
589865.DaAHT2_2164				(PF04326)
589865.DaAHT2_2018				(PF01695)
589865.DaAHT2_0380				(PF13173)
589865.DaAHT2_2457				(PF00543)
589865.DaAHT2_1087				(PF03567)
589865.DaAHT2_2462				(PF05063)
589865.DaAHT2_2187				(PF01695)
589865.DaAHT2_0331				(PF01695)
589865.DaAHT2_2062				(PF01695)
589865.DaAHT2_2083				(PF01695)
589865.DaAHT2_2080				(PF01695)
589865.DaAHT2_0633				(PF00543)
589865.DaAHT2_1336				(PF00862)
589865.DaAHT2_0487				(PF05063)
589865.DaAHT2_0031				(PF04326)
589865.DaAHT2_0030				(PF04326)
589865.DaAHT2_1523				(PF01695)
589865.DaAHT2_0127				(PF00543)
589865.DaAHT2_1001				(PF13173)
589865.DaAHT2_1673				PF13513
589865.DaAHT2_1801				(PF13173)
589865.DaAHT2_0999				(PF01695)
589865.DaAHT2_2591				(PF01695)
589865.DaAHT2_0187				(PF10504)
589865.DaAHT2_0982				(PF03567)
589865.DaAHT2_1864				(PF13173)
589865.DaAHT2_1600				(PF04326)
589865.DaAHT2_1736				(PF01695)
589865.DaAHT2_0428				(PF04187)
589865.DaAHT2_0084				(PF00543)
589865.DaAHT2_0884				(PF10143)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================