Effective results for Moritella sp. PE36 (eggnog40)

Summary

Number of putative secreted proteins: 44
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 30 eukaryotic-like domains, contained in 44 proteins (5 high, 39 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
58051.PE36_03431				PF13127	ER
58051.PE36_17700				PF13127	ER
58051.PE36_18710				(PF01764)	ER
58051.PE36_08421				(PF05929)	(ER)
58051.PE36_12737				(PF05929)	(ER)
58051.PE36_04041				(PF05548)	ER
58051.PE36_10238				(PF00045)	ER
58051.PE36_10538				PF00058	ER
58051.PE36_18795				PF11105	ER
58051.PE36_04828				(PF00050)	ER
58051.PE36_21249				(PF09811)	(mitochondrial)
58051.PE36_06117				(PF03102)	(mitochondrial)
58051.PE36_03416				(PF01764)	(ER)
58051.PE36_17105				(PF10609)	(mitochondrial)
58051.PE36_23076				(PF06418)	(mitochondrial); not used
58051.PE36_00960				(PF12256) (PF12255)
58051.PE36_16545				(PF03848)	(plastid)
58051.PE36_20270				(PF03199) (PF03917)
58051.PE36_16520				(PF01715)
58051.PE36_09703				(PF10014)
58051.PE36_12257				(PF03848)
58051.PE36_03361				(PF10014)
58051.PE36_23231				(PF01715)
58051.PE36_22550				(PF12256)
58051.PE36_06048				(PF03102)
58051.PE36_01582				PF02807
58051.PE36_11557				(PF10609)
58051.PE36_08091				(PF01764)
58051.PE36_01857				(PF04446)
58051.PE36_18860				(PF06042)
58051.PE36_10158				(PF00070)
58051.PE36_03686				(PF10014)
58051.PE36_14380				(PF13875)
58051.PE36_19590				(PF01490)
58051.PE36_08116				(PF13455)
58051.PE36_17725				(PF08271)
58051.PE36_17340				(PF10354)
58051.PE36_13057				(PF04970)
58051.PE36_10403				(PF10609)
58051.PE36_23071				(PF06418)	not used
58051.PE36_17962				(PF06042)
58051.PE36_00970				(PF03538)
58051.PE36_06227				(PF03102)
58051.PE36_08391				(PF04970)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: YES (FDR = 7.7 %)
  Estimated copy number = 2.25 (18/8 KEGG proteins)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================