Effective results for Thermoanaerobacterium thermosaccharolyticum DSM 571 (eggnog40)

Summary

Number of putative secreted proteins: 34
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 16 eukaryotic-like domains, contained in 34 proteins (1 high, 33 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
580327.Tthe_0834				(PF00163)	mitochondrial
580327.Tthe_0574				(PF01930)	ER
580327.Tthe_1731				(PF00834)	(ER)
580327.Tthe_2241				(PF07837) (PF02971)
580327.Tthe_1037				(PF01969)
580327.Tthe_1036				(PF01969)
580327.Tthe_1518				(PF00834)
580327.Tthe_0830				(PF06777)
580327.Tthe_0234				(PF02915)
580327.Tthe_0138				(PF04041)
580327.Tthe_2699				(PF01930)
580327.Tthe_1887				(PF02915)
580327.Tthe_2038				(PF02915)
580327.Tthe_0104				(PF14938)
580327.Tthe_2204				(PF02915)
580327.Tthe_1936				(PF04041)
580327.Tthe_1929				(PF04041)
580327.Tthe_1928				(PF04041)
580327.Tthe_0460				(PF00163)
580327.Tthe_0265				(PF07085)
580327.Tthe_2670				(PF02732)
580327.Tthe_1902				(PF00834)
580327.Tthe_1905				(PF00834)
580327.Tthe_2249				(PF02915)
580327.Tthe_1114				(PF07085)
580327.Tthe_1111				(PF07085)
580327.Tthe_1800				(PF01409)
580327.Tthe_1801				(PF01409)
580327.Tthe_2613				(PF01930)
580327.Tthe_0767				(PF07085)
580327.Tthe_0972				(PF02915)
580327.Tthe_1554				PF09687
580327.Tthe_1385				(PF04423)
580327.Tthe_1843				(PF02475)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================