Effective results for Vibrio tasmaniensis LGP32 (eggnog40)
Summary
Number of putative secreted proteins: 640
- Predicted by EffectiveT3: 201 (high confidence), 304 (low confidence)
- Predicted by EffectiveCCBD: 31 within, 27 before, 63 behind expected region 25..70aa
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 16 eukaryotic-like domains, contained in 27 proteins (0 high, 27 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type III), Type VI
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
---|---|---|---|---|---|
575788.VS_II1012 | + | (>) | mitochondrial | ||
575788.VS_3159 | + | (ER); ER | |||
575788.VS_II1018 | (>) | (ER) | |||
575788.VS_II0296 | + | ER | |||
575788.VS_2222 | + | ER | |||
575788.VS_2165 | (>) | ER | |||
575788.VS_2783 | + | mitochondrial | |||
575788.VS_1140 | (>) | (mitochondrial) | |||
575788.VS_0141 | + | mitochondrial | |||
575788.VS_1846 | (PF17186) | (mitochondrial); (ER) | |||
575788.VS_II1229 | (>) | ER | |||
575788.VS_II0176 | + | ER | |||
575788.VS_2152 | + | ER | |||
575788.VS_2153 | (PF00075) | mitochondrial | |||
575788.VS_II1039 | + | ER | |||
575788.VS_2939 | + | ER | |||
575788.VS_1947 | + | (mitochondrial) | |||
575788.VS_1360 | (<) | mitochondrial; plastid | |||
575788.VS_II1116 | (<) | ER | |||
575788.VS_II0574 | (PF06468) | ER | |||
575788.VS_II0573 | (PF06468) | ER | |||
575788.VS_0997 | + | (mitochondrial); plastid | |||
575788.VS_1181 | + | ER; (ER) | |||
575788.VS_II0890 | (>) | ER | |||
575788.VS_0198 | (>) | mitochondrial | |||
575788.VS_0207 | (<) | (ER) | |||
575788.VS_3081 | + | (mitochondrial); (ER) | |||
575788.VS_II1161 | (>) | ER | |||
575788.VS_2917 | (>) | ER | |||
575788.VS_II0092 | (PF14863) | ER | |||
575788.VS_II0428 | + | ER | |||
575788.VS_0187 | (PF05686) | (ER); (mitochondrial) | |||
575788.VS_0183 | + | (mitochondrial) | |||
575788.VS_1241 | (>) | ER | |||
575788.VS_II0229 | (PF14863) | (ER) | |||
575788.VS_II0131 | (PF00834) | mitochondrial; (mitochondrial) | |||
575788.VS_II1022 | (>) | mitochondrial | |||
575788.VS_0223 | (>) | ER | |||
575788.VS_2101 | (PF14863) | ER | |||
575788.VS_II0444 | + | (ER) | |||
575788.VS_0439 | (>) | mitochondrial; (mitochondrial) | |||
575788.VS_0589 | + | mitochondrial | |||
575788.VS_2561 | (>) | ER | |||
575788.VS_II0211 | (>) | ER | |||
575788.VS_II0262 | (PF00031) | ER | |||
575788.VS_2641 | (>) | ER | |||
575788.VS_II1444 | (>) | ER; (ER) | |||
575788.VS_II1053 | (>) | ER | |||
575788.VS_1554 | + | ER | |||
575788.VS_II1471 | (>) | ER | |||
575788.VS_2593 | + | (mitochondrial); plastid | |||
575788.VS_II0239 | (>) | ER | |||
575788.VS_2035 | (>) | ER | |||
575788.VS_1310 | (<) | ER | |||
575788.VS_1257 | + | ER | |||
575788.VS_1708 | + | ER | |||
575788.VS_1417 | (PF08180) | ER | |||
575788.VS_II0244 | (PF17186) | ER | |||
575788.VS_II0503 | (>) | ER | |||
575788.VS_1078 | (>) | ER | |||
575788.VS_II0810 | + | ER | |||
575788.VS_0627 | + | (ER); (plastid) | |||
575788.VS_1981 | (>) | ER | |||
575788.VS_1057 | (>) | ER | |||
575788.VS_0456 | (<) | mitochondrial; (mitochondrial) | |||
575788.VS_2419 | (PF06500) | ER | |||
575788.VS_2418 | (PF06500) | mitochondrial; (mitochondrial) | |||
575788.VS_II1481 | + | (mitochondrial); (plastid) | |||
575788.VS_2658 | + | (mitochondrial) | |||
575788.VS_2084 | (+) | (ER) | |||
575788.VS_2427 | + | (plastid) | |||
575788.VS_II1123 | (+) | mitochondrial | |||
575788.VS_II0529 | (+) | ER; plastid | |||
575788.VS_2313 | (<) | (mitochondrial) | |||
575788.VS_2223 | + | plastid | |||
575788.VS_II0605 | + | (mitochondrial) | |||
575788.VS_1528 | (+) | (ER) | |||
575788.VS_1144 | (+) | mitochondrial; (mitochondrial) | |||
575788.VS_II1135 | + | (plastid) | |||
575788.VS_2283 | + | (plastid) | |||
575788.VS_II1221 | (+) | mitochondrial | |||
575788.VS_II0771 | (+) | ER | |||
575788.VS_II0612 | (>) | (mitochondrial) | |||
575788.VS_0179 | + | (plastid) | |||
575788.VS_II0167 | + | (>) | |||
575788.VS_1491 | + | (mitochondrial); not used | |||
575788.VS_2859 | + | (plastid) | |||
575788.VS_II0151 | (+) | (mitochondrial) | |||
575788.VS_2136 | + | (plastid) | |||
575788.VS_2689 | (+) | ER | |||
575788.VS_0373 | + | (ER) | |||
575788.VS_0016 | + | ||||
575788.VS_II0094 | (+) | (mitochondrial) | |||
575788.VS_0812 | + | plastid | |||
575788.VS_1106 | (+) | (mitochondrial) | |||
575788.VS_2477 | (+) | ER | |||
575788.VS_II1319 | (<) | (ER) | |||
575788.VS_II1311 | + | (plastid) | |||
575788.VS_II0943 | (+) | ER | |||
575788.VS_0354 | (+) | mitochondrial | |||
575788.VS_0814 | + | plastid | |||
575788.VS_II1093 | (+) | (mitochondrial) | |||
575788.VS_II0059 | + | (plastid) | |||
575788.VS_1298 | + | (plastid) | |||
575788.VS_II1082 | + | (mitochondrial) | |||
575788.VS_II1339 | (+) | (ER) | |||
575788.VS_2813 | (+) | (mitochondrial) | |||
575788.VS_0861 | + | (mitochondrial) | |||
575788.VS_1623 | (PF10013) | (mitochondrial); not used | |||
575788.VS_1923 | (+) | (mitochondrial) | |||
575788.VS_2391 | (+) | ER | |||
575788.VS_II0075 | (PF03199) (PF03917) | ||||
575788.VS_II0860 | (+) | ER | |||
575788.VS_II0924 | (+) | ER; (ER) | |||
575788.VS_2396 | (+) | (ER) | |||
575788.VS_0671 | (+) | (mitochondrial) | |||
575788.VS_3146 | + | (mitochondrial) | |||
575788.VS_II1198 | + | + | |||
575788.VS_II1503 | (+) | (ER) | |||
575788.VS_II0472 | (+) | ER | |||
575788.VS_1399 | + | (>) | |||
575788.VS_II0496 | (+) | ER | |||
575788.VS_3009 | (+) | ER | |||
575788.VS_0009 | (+) | ER | |||
575788.VS_1255 | (+) | ER | |||
575788.VS_1413 | + | plastid | |||
575788.VS_II1284 | + | plastid | |||
575788.VS_II1464 | (+) | (mitochondrial) | |||
575788.VS_2294 | + | plastid | |||
575788.VS_1403 | (+) | ER | |||
575788.VS_1067 | (+) | mitochondrial; (mitochondrial) | |||
575788.VS_0624 | + | (plastid) | |||
575788.VS_II0913 | + | (<) | |||
575788.VS_3027 | (+) | (mitochondrial) | |||
575788.VS_1556 | (>) | (mitochondrial) | |||
575788.VS_2182 | + | (ER) | |||
575788.VS_1472 | (+) | (mitochondrial); plastid | |||
575788.VS_1691 | + | (mitochondrial) | |||
575788.VS_II1488 | + | (ER) | |||
575788.VS_II1486 | (+) | ER | |||
575788.VS_0930 | (+) | ER | |||
575788.VS_II0287 | (+) | (ER) | |||
575788.VS_0804 | + | (plastid) | |||
575788.VS_II1485 | (+) | ER | |||
575788.VS_II0632 | (+) | ER | |||
575788.VS_1461 | (+) | ER; not used | |||
575788.VS_II0832 | + | ||||
575788.VS_1684 | + | ||||
575788.VS_1688 | + | not used | |||
575788.VS_1042 | + | ||||
575788.VS_II0397 | + | ||||
575788.VS_2555 | + | ||||
575788.VS_2551 | (PF01121) | ||||
575788.VS_2552 | (PF01121) | ||||
575788.VS_0332 | + | ||||
575788.VS_2420 | + | ||||
575788.VS_0152 | + | ||||
575788.VS_1852 | + | ||||
575788.VS_II0839 | + | ||||
575788.VS_2889 | + | ||||
575788.VS_II0295 | (>) | ||||
575788.VS_II0297 | + | ||||
575788.VS_II0140 | (+) | (>) | |||
575788.VS_1123 | + | ||||
575788.VS_0815 | + | ||||
575788.VS_2221 | + | ||||
575788.VS_II0744 | + | ||||
575788.VS_2168 | (>) | ||||
575788.VS_1031 | (<) | ||||
575788.VS_1039 | (>) | ||||
575788.VS_1148 | (+) | (plastid) | |||
575788.VS_0143 | + | ||||
575788.VS_0826 | (>) | ||||
575788.VS_II1133 | + | ||||
575788.VS_1842 | + | ||||
575788.VS_II0196 | + | ||||
575788.VS_2948 | + | ||||
575788.VS_2896 | (+) | (>) | |||
575788.VS_2302 | + | ||||
575788.VS_1273 | + | ||||
575788.VS_II0778 | (+) | (plastid) | |||
575788.VS_2230 | + | ||||
575788.VS_2233 | (+) | (<) | |||
575788.VS_II0177 | + | ||||
575788.VS_1445 | + | ||||
575788.VS_1339 | (<) | ||||
575788.VS_1530 | (+) | (mitochondrial) | |||
575788.VS_0318 | + | ||||
575788.VS_II1157 | (>) | ||||
575788.VS_1152 | (>) | ||||
575788.VS_II1151 | + | ||||
575788.VS_2448 | + | ||||
575788.VS_0799 | (>) | ||||
575788.VS_0172 | (PF00834) | ||||
575788.VS_II1102 | + | ||||
575788.VS_1830 | (>) | ||||
575788.VS_II1215 | + | ||||
575788.VS_3154 | + | ||||
575788.VS_1944 | (+) | (>) | |||
575788.VS_2849 | + | ||||
575788.VS_2844 | + | ||||
575788.VS_II1367 | (<) | not used | |||
575788.VS_II1363 | + | ||||
575788.VS_II1361 | + | ||||
575788.VS_1361 | (+) | (mitochondrial) | |||
575788.VS_0369 | (>) | ||||
575788.VS_1069 | + | ||||
575788.VS_1787 | + | ||||
575788.VS_0782 | + | ||||
575788.VS_0787 | + | ||||
575788.VS_3095 | + | ||||
575788.VS_II1111 | (<) | ||||
575788.VS_1827 | (>) | ||||
575788.VS_0560 | + | ||||
575788.VS_II0373 | + | ||||
575788.VS_2854 | + | ||||
575788.VS_2325 | (PF00075) | ||||
575788.VS_2324 | + | ||||
575788.VS_II1372 | + | ||||
575788.VS_II1374 | (+) | + | |||
575788.VS_2217 | + | ||||
575788.VS_2214 | + | ||||
575788.VS_2211 | (>) | ||||
575788.VS_0219 | + | ||||
575788.VS_2218 | + | ||||
575788.VS_II0154 | + | ||||
575788.VS_2132 | + | ||||
575788.VS_2683 | + | ||||
575788.VS_2662 | (>) | ||||
575788.VS_2663 | + | ||||
575788.VS_0688 | + | ||||
575788.VS_II1170 | + | ||||
575788.VS_3087 | + | ||||
575788.VS_II0366 | + | ||||
575788.VS_1963 | (<) | ||||
575788.VS_2868 | (PF00834) | ||||
575788.VS_II1307 | + | ||||
575788.VS_0985 | (<) | ||||
575788.VS_1564 | + | ||||
575788.VS_1565 | + | ||||
575788.VS_2582 | + | ||||
575788.VS_II0425 | + | ||||
575788.VS_II0186 | + | ||||
575788.VS_2671 | (+) | plastid | |||
575788.VS_1582 | + | ||||
575788.VS_1803 | + | ||||
575788.VS_2451 | + | ||||
575788.VS_2454 | (>) | ||||
575788.VS_II0221 | + | ||||
575788.VS_2875 | + | ||||
575788.VS_2272 | + | ||||
575788.VS_1191 | + | ||||
575788.VS_II1402 | + | ||||
575788.VS_2111 | (+) | (ER) | |||
575788.VS_1325 | + | ||||
575788.VS_2062 | + | ||||
575788.VS_II0432 | + | ||||
575788.VS_1775 | + | ||||
575788.VS_2483 | (<) | ||||
575788.VS_2481 | (>) | ||||
575788.VS_1596 | + | ||||
575788.VS_2093 | (+) | (<) | |||
575788.VS_1901 | + | ||||
575788.VS_II1090 | + | ||||
575788.VS_II1322 | + | ||||
575788.VS_II1323 | + | ||||
575788.VS_II1321 | + | ||||
575788.VS_II0902 | + | ||||
575788.VS_3041 | + | ||||
575788.VS_II0138 | + | ||||
575788.VS_II1432 | + | ||||
575788.VS_II0051 | + | ||||
575788.VS_0806 | + | ||||
575788.VS_2622 | (+) | (plastid) | |||
575788.VS_1121 | + | ||||
575788.VS_2564 | + | ||||
575788.VS_II0845 | (>) | ||||
575788.VS_0237 | + | ||||
575788.VS_0232 | + | ||||
575788.VS_0726 | + | ||||
575788.VS_1631 | + | ||||
575788.VS_1637 | (+) | (plastid) | |||
575788.VS_II0087 | (>) | ||||
575788.VS_1918 | (>) | ||||
575788.VS_II1089 | + | ||||
575788.VS_II1336 | + | ||||
575788.VS_II0206 | (>) | ||||
575788.VS_3071 | + | ||||
575788.VS_II1529 | (<) | ||||
575788.VS_II0084 | + | ||||
575788.VS_II0063 | + | ||||
575788.VS_II0454 | + | ||||
575788.VS_1756 | + | ||||
575788.VS_II0458 | + | ||||
575788.VS_II0697 | + | ||||
575788.VS_II0858 | + | ||||
575788.VS_0531 | (+) | (ER) | |||
575788.VS_0242 | (>) | ||||
575788.VS_0669 | + | ||||
575788.VS_0665 | (<) | ||||
575788.VS_0394 | (>) | ||||
575788.VS_II0325 | (>) | ||||
575788.VS_II1188 | + | ||||
575788.VS_II0102 | + | ||||
575788.VS_II0070 | (<) | ||||
575788.VS_0010 | + | ||||
575788.VS_1384 | + | ||||
575788.VS_1653 | (PF00075) | ||||
575788.VS_0512 | + | ||||
575788.VS_0675 | + | ||||
575788.VS_0381 | (>) | ||||
575788.VS_2389 | + | ||||
575788.VS_II0266 | + | ||||
575788.VS_3013 | + | ||||
575788.VS_3124 | (+) | (ER) | |||
575788.VS_II0932 | + | ||||
575788.VS_II1507 | + | ||||
575788.VS_II1227 | + | ||||
575788.VS_II1226 | + | ||||
575788.VS_II0003 | + | ||||
575788.VS_0842 | (<) | ||||
575788.VS_0844 | (<) | ||||
575788.VS_0846 | + | ||||
575788.VS_2731 | + | ||||
575788.VS_II0671 | + | ||||
575788.VS_0899 | + | ||||
575788.VS_II0877 | + | ||||
575788.VS_II1056 | + | ||||
575788.VS_II1292 | + | ||||
575788.VS_0288 | + | ||||
575788.VS_0749 | + | ||||
575788.VS_II0274 | + | ||||
575788.VS_1154 | (+) | (ER) | |||
575788.VS_II1475 | (>) | ||||
575788.VS_0490 | + | ||||
575788.VS_2280 | + | ||||
575788.VS_2359 | (<) | ||||
575788.VS_II0412 | + | ||||
575788.VS_1704 | (PF08732) | ||||
575788.VS_1700 | + | ||||
575788.VS_1679 | + | ||||
575788.VS_0499 | + | ||||
575788.VS_0278 | + | ||||
575788.VS_1412 | + | ||||
575788.VS_1419 | + | ||||
575788.VS_0272 | + | ||||
575788.VS_0471 | (PF00310) | ||||
575788.VS_0472 | (PF00310) | ||||
575788.VS_0474 | (PF00310) | ||||
575788.VS_0617 | (<) | not used | |||
575788.VS_2469 | + | ||||
575788.VS_II1046 | + | ||||
575788.VS_II1289 | (>) | ||||
575788.VS_0299 | + | ||||
575788.VS_II1263 | (<) | ||||
575788.VS_II0390 | + | ||||
575788.VS_II0507 | (+) | (mitochondrial) | |||
575788.VS_0828 | + | ||||
575788.VS_1718 | + | ||||
575788.VS_2758 | + | ||||
575788.VS_2192 | + | (<) | |||
575788.VS_1402 | + | ||||
575788.VS_1401 | + | ||||
575788.VS_2621 | (>) | ||||
575788.VS_1180 | + | ||||
575788.VS_0590 | + | ||||
575788.VS_0449 | + | ||||
575788.VS_0116 | + | ||||
575788.VS_1878 | + | ||||
575788.VS_1512 | (>) | ||||
575788.VS_3117 | + | ||||
575788.VS_3115 | + | ||||
575788.VS_1980 | + | ||||
575788.VS_II0854 | + | ||||
575788.VS_0905 | + | ||||
575788.VS_1277 | (PF04664) | ||||
575788.VS_2187 | + | ||||
575788.VS_2185 | (>) | ||||
575788.VS_0810 | + | ||||
575788.VS_II0531 | + | ||||
575788.VS_II0535 | + | ||||
575788.VS_II0537 | + | ||||
575788.VS_1692 | + | ||||
575788.VS_1504 | (<) | ||||
575788.VS_1189 | + | ||||
575788.VS_0701 | (>) | ||||
575788.VS_0098 | + | ||||
575788.VS_II1392 | + | ||||
575788.VS_2960 | (>) | ||||
575788.VS_II0812 | + | ||||
575788.VS_II0885 | + | ||||
575788.VS_II0396 | (>) | ||||
575788.VS_2032 | + | ||||
575788.VS_2862 | + | ||||
575788.VS_0802 | (+) | plastid | |||
575788.VS_0676 | + | ||||
575788.VS_1467 | (+) | ||||
575788.VS_2083 | (+) | ||||
575788.VS_2087 | (+) | ||||
575788.VS_II0830 | (+) | not used | |||
575788.VS_1680 | (+) | ||||
575788.VS_1514 | (+) | ||||
575788.VS_1513 | (+) | ||||
575788.VS_1049 | (+) | ||||
575788.VS_2793 | (+) | ||||
575788.VS_0150 | (+) | ||||
575788.VS_2958 | (+) | ||||
575788.VS_2880 | + | ||||
575788.VS_0922 | (+) | ||||
575788.VS_2319 | + | ||||
575788.VS_II1348 | (+) | ||||
575788.VS_1043 | (+) | ||||
575788.VS_II0608 | (+) | ||||
575788.VS_II0606 | (+) | ||||
575788.VS_1459 | (+) | ||||
575788.VS_1217 | (+) | ||||
575788.VS_II0510 | (+) | ||||
575788.VS_1526 | (+) | ||||
575788.VS_2545 | (+) | ||||
575788.VS_2784 | (+) | ||||
575788.VS_II1219 | (+) | ||||
575788.VS_0325 | (+) | ||||
575788.VS_0144 | (+) | ||||
575788.VS_II1009 | (+) | ||||
575788.VS_0823 | (+) | ||||
575788.VS_2942 | (+) | ||||
575788.VS_II1228 | (+) | ||||
575788.VS_II1358 | (+) | ||||
575788.VS_II0777 | (+) | ||||
575788.VS_II0775 | (+) | ||||
575788.VS_II0615 | (+) | not used | |||
575788.VS_II0616 | (+) | not used | |||
575788.VS_1335 | (+) | ||||
575788.VS_1334 | (+) | ||||
575788.VS_1449 | (+) | ||||
575788.VS_1338 | (+) | ||||
575788.VS_0943 | (+) | ||||
575788.VS_1332 | (+) | ||||
575788.VS_0319 | (+) | ||||
575788.VS_1344 | (+) | ||||
575788.VS_0174 | (+) | ||||
575788.VS_II1032 | (+) | ||||
575788.VS_1245 | (+) | ||||
575788.VS_II0346 | (+) | ||||
575788.VS_II0344 | (+) | ||||
575788.VS_1943 | (+) | ||||
575788.VS_1940 | (+) | ||||
575788.VS_1941 | (+) | ||||
575788.VS_2339 | (+) | ||||
575788.VS_II0764 | (+) | ||||
575788.VS_1917 | (+) | ||||
575788.VS_1233 | (+) | ||||
575788.VS_1543 | (+) | ||||
575788.VS_1781 | (+) | ||||
575788.VS_1165 | (+) | ||||
575788.VS_1494 | (+) | ||||
575788.VS_0780 | (+) | ||||
575788.VS_0788 | (+) | ||||
575788.VS_0167 | (+) | ||||
575788.VS_3098 | (+) | ||||
575788.VS_3090 | (+) | ||||
575788.VS_1955 | (+) | ||||
575788.VS_1954 | (+) | ||||
575788.VS_1958 | (+) | ||||
575788.VS_2851 | (+) | ||||
575788.VS_II1370 | (+) | ||||
575788.VS_II1373 | (+) | ||||
575788.VS_II0791 | (+) | ||||
575788.VS_II0577 | (+) | ||||
575788.VS_2213 | (+) | ||||
575788.VS_II0155 | (+) | ||||
575788.VS_1733 | (+) | ||||
575788.VS_2046 | (+) | ||||
575788.VS_2041 | (+) | ||||
575788.VS_1798 | (+) | ||||
575788.VS_II0897 | (+) | ||||
575788.VS_1316 | (+) | ||||
575788.VS_2365 | (+) | ||||
575788.VS_2468 | (+) | ||||
575788.VS_1481 | (+) | ||||
575788.VS_0753 | (+) | ||||
575788.VS_0683 | (+) | ||||
575788.VS_II1171 | (+) | ||||
575788.VS_3083 | (+) | ||||
575788.VS_3086 | (+) | ||||
575788.VS_II0299 | (+) | ||||
575788.VS_II0148 | (+) | ||||
575788.VS_0811 | (+) | ||||
575788.VS_1368 | (+) | ||||
575788.VS_0360 | (+) | ||||
575788.VS_1104 | (+) | ||||
575788.VS_II0746 | (+) | ||||
575788.VS_2476 | (+) | ||||
575788.VS_II0524 | (+) | ||||
575788.VS_1615 | (+) | ||||
575788.VS_2450 | (+) | ||||
575788.VS_2455 | (+) | not used | |||
575788.VS_II0226 | (+) | ||||
575788.VS_3032 | (+) | ||||
575788.VS_II1318 | (+) | ||||
575788.VS_II1403 | (+) | ||||
575788.VS_II0133 | (+) | not used | |||
575788.VS_3116 | (+) | ||||
575788.VS_II1028 | (+) | ||||
575788.VS_II1026 | (+) | ||||
575788.VS_II1255 | (+) | ||||
575788.VS_II0436 | (+) | ||||
575788.VS_1773 | (+) | ||||
575788.VS_1772 | (+) | ||||
575788.VS_1375 | (+) | ||||
575788.VS_0356 | (+) | not used | |||
575788.VS_1115 | (+) | ||||
575788.VS_II0691 | (+) | ||||
575788.VS_II1326 | (+) | ||||
575788.VS_II1328 | (+) | ||||
575788.VS_2807 | (+) | ||||
575788.VS_3042 | (+) | ||||
575788.VS_II1389 | (+) | ||||
575788.VS_1260 | (+) | ||||
575788.VS_II1431 | (+) | ||||
575788.VS_1748 | (+) | ||||
575788.VS_1342 | (+) | ||||
575788.VS_II0939 | (+) | ||||
575788.VS_1126 | (+) | ||||
575788.VS_0236 | (+) | ||||
575788.VS_1895 | (+) | ||||
575788.VS_1271 | (+) | ||||
575788.VS_II1088 | (+) | ||||
575788.VS_2817 | (+) | ||||
575788.VS_3074 | (+) | ||||
575788.VS_II0114 | (+) | ||||
575788.VS_0883 | (+) | ||||
575788.VS_1283 | (+) | ||||
575788.VS_1282 | (+) | ||||
575788.VS_II1007 | (+) | ||||
575788.VS_II1005 | (+) | ||||
575788.VS_II1003 | (+) | ||||
575788.VS_0409 | (+) | ||||
575788.VS_II0856 | + | ||||
575788.VS_0243 | (+) | ||||
575788.VS_0395 | (+) | ||||
575788.VS_II0326 | (+) | ||||
575788.VS_II0323 | (+) | ||||
575788.VS_1638 | (+) | ||||
575788.VS_II0213 | (+) | ||||
575788.VS_II1185 | (+) | not used | |||
575788.VS_II0105 | (+) | ||||
575788.VS_II0108 | (+) | ||||
575788.VS_0896 | (+) | ||||
575788.VS_II1455 | (+) | ||||
575788.VS_II1456 | + | ||||
575788.VS_II1453 | (+) | ||||
575788.VS_1711 | (+) | ||||
575788.VS_II0078 | (+) | ||||
575788.VS_2018 | (+) | ||||
575788.VS_2012 | (+) | ||||
575788.VS_0876 | (+) | ||||
575788.VS_II0465 | (+) | ||||
575788.VS_2702 | (+) | not used | |||
575788.VS_2631 | (+) | ||||
575788.VS_2635 | (+) | ||||
575788.VS_0706 | (+) | ||||
575788.VS_1652 | (+) | ||||
575788.VS_II0486 | (+) | ||||
575788.VS_0416 | (+) | ||||
575788.VS_2567 | (+) | ||||
575788.VS_1933 | (+) | ||||
575788.VS_II0267 | (+) | ||||
575788.VS_II1195 | (+) | ||||
575788.VS_II1194 | (+) | ||||
575788.VS_II1509 | (+) | ||||
575788.VS_II1225 | (+) | ||||
575788.VS_2025 | (+) | ||||
575788.VS_II0712 | (+) | ||||
575788.VS_II0713 | (+) | ||||
575788.VS_0840 | (+) | ||||
575788.VS_II1439 | (+) | ||||
575788.VS_II0493 | (+) | ||||
575788.VS_II0936 | (+) | ||||
575788.VS_II1051 | (+) | ||||
575788.VS_0118 | (+) | ||||
575788.VS_0119 | (+) | ||||
575788.VS_II1294 | (+) | ||||
575788.VS_1795 | (+) | ||||
575788.VS_3133 | (+) | ||||
575788.VS_1992 | (+) | ||||
575788.VS_II1510 | + | ||||
575788.VS_II1512 | (+) | ||||
575788.VS_II0704 | (+) | ||||
575788.VS_1703 | (+) | ||||
575788.VS_1414 | (+) | ||||
575788.VS_0249 | (+) | ||||
575788.VS_1079 | (+) | ||||
575788.VS_2445 | (+) | ||||
575788.VS_2502 | (+) | ||||
575788.VS_II0655 | (+) | ||||
575788.VS_II1048 | (+) | ||||
575788.VS_II1282 | (+) | ||||
575788.VS_II0245 | (+) | ||||
575788.VS_2295 | (+) | ||||
575788.VS_II1268 | (+) | ||||
575788.VS_II0027 | (+) | ||||
575788.VS_0913 | (+) | ||||
575788.VS_2341 | (+) | ||||
575788.VS_0614 | (+) | ||||
575788.VS_II0500 | (+) | ||||
575788.VS_II0461 | (+) | ||||
575788.VS_II0659 | (+) | ||||
575788.VS_2194 | (+) | not used | |||
575788.VS_2193 | (+) | ||||
575788.VS_1400 | (+) | ||||
575788.VS_1510 | (+) | ||||
575788.VS_II0816 | (+) | ||||
575788.VS_1088 | (+) | ||||
575788.VS_0445 | (+) | ||||
575788.VS_0440 | (+) | ||||
575788.VS_3088 | (+) | ||||
575788.VS_0620 | (+) | ||||
575788.VS_II1077 | (+) | ||||
575788.VS_II1075 | (+) | ||||
575788.VS_II0912 | (+) | ||||
575788.VS_1815 | (+) | ||||
575788.VS_2375 | (+) | ||||
575788.VS_3119 | (+) | ||||
575788.VS_II0725 | (+) | ||||
575788.VS_II0726 | (+) | ||||
575788.VS_2188 | (+) | ||||
575788.VS_II0849 | (+) | ||||
575788.VS_1053 | (+) | ||||
575788.VS_II0247 | (+) | ||||
575788.VS_0636 | (+) | ||||
575788.VS_0634 | (+) | ||||
575788.VS_II0757 | (+) | ||||
575788.VS_2980 | (+) | ||||
575788.VS_2220 | (+) | ||||
575788.VS_0803 | (+) | ||||
575788.VS_II0758 | (+) | ||||
575788.VS_II0754 | (+) | ||||
575788.VS_II0631 | (+) | ||||
575788.VS_2773 | (+) |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- EffectiveT3 predictions using new standard model 2.0.1 (PROTEINS.NEW.EFFECTIVET3)
- EffectiveT3 predictions using old standard model 1.0.1 (PROTEINS.OLD.EFFECTIVET3)
- EffectiveCCBD predictions (PROTEINS.CHAPERONES.TXT)
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: YES (FDR = 0.5 %)
- Functional Type III secretion system: YES (FDR = 12.5 %)
Estimated copy number = 0.5 (5/10 KEGG proteins)
- Functional Type IV secretion system: NO (FDR = 7.2 %)
- Functional Type VI secretion system: YES (FDR = 7.7 %)
Estimated copy number = 1.75 (14/8 KEGG proteins)
Individual results for each secretion system
- List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
- List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
- List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
- List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)
Parameters:
==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================
Estimated copy number = 0.5 (5/10 KEGG proteins)
Estimated copy number = 1.75 (14/8 KEGG proteins)